Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27280 195 / 7e-63 Zim17-type zinc finger protein (.1) AT1G68730 81 / 6e-19 Zim17-type zinc finger protein (.1) AT3G54826 45 / 9e-06 Zim17-type zinc finger protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021838 [exp] 348 / 9e-123 AT5G27280 216 / 3e-71 Zim17-type zinc finger protein (.1) Lus10019154 [exp] 74 / 9e-17 AT1G68730 119 / 2e-35 Zim17-type zinc finger protein (.1) Lus10034401 [exp] 74 / 3e-16 AT1G68730 130 / 1e-38 Zim17-type zinc finger protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G246200 [exp] 248 / 1e-83 AT5G27280 225 / 5e-75 Zim17-type zinc finger protein (.1) Potri.002G015900 [exp] 229 / 2e-76 AT5G27280 219 / 2e-72 Zim17-type zinc finger protein (.1) Potri.010G132400 [exp] 74 / 4e-16 AT1G68730 139 / 1e-42 Zim17-type zinc finger protein (.1) Potri.008G037300 [exp] 50 / 3e-07 AT3G54826 173 / 2e-54 Zim17-type zinc finger protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05180 [flax] [poplar] zf-DNL DNL zinc finger
Representative CDS sequence Show only first row Show all	>Lus10034555 pacid=23162920 polypeptide=Lus10034555 locus=Lus10034555.g ID=Lus10034555.BGIv1.0 annot-version=v1.0 ATGGAAGCTCTGAGCTCATCTGCTGCCATCCTCTCCTCATCCTCCTCCTCCTCTTCATCATCGTCGTCTCTCTCTTTCTTCTCTCCGAGGCGAAAGGATT CTTCCTTCAGAATCCTCCGATGCCACCCTTCCTCTTCCAAAAATAACGGAGATAATTCGGATCTGCGCTCTGGCTCCGACCCGAATGAGTCGACTAGCAT CGTCCCTTTCTTCAATCGCAACACCCTTTCCAAGAGCAATTTTAATCAAGATGATGCCATGGGATTGGTTCTGAGCGCGGCGTCGCTGAGGGGATGGACA ACCGGTTCCGGCATGGAAGGACCACCAGCACCCGTCGGAGCAGAAGGAGGATCCAATACTGAGACGGTTTCTACCTTGCCGTGGTCTTTGTTCACCAAGT CTCCCCGGAGGAGAATGCGAGTGGCTTTCACCTGCAACGTTTGTGGCCAACGCACCACCAGGGCCATTAACCCTCACGCCTACACCGACGGCACCGTCTT CGTTCAGTGCTGCGGATGTAATGTGTTTCATAAGCTGGTGGATAATCTGAACCTGTTCCATGAGATGAAGTGCTATGTGAACCCGGATTTCAAGTATAAG GATTCGAAATGGGACTTCGGGTTTAGCCTGTTTGACGATGAGGATCACGATCAGGATGATGATGGTGATGGTAATGCTTCATATCCAATCTGA
AA sequence Show only first row Show all	>Lus10034555 pacid=23162920 polypeptide=Lus10034555 locus=Lus10034555.g ID=Lus10034555.BGIv1.0 annot-version=v1.0 MEALSSSAAILSSSSSSSSSSSSLSFFSPRRKDSSFRILRCHPSSSKNNGDNSDLRSGSDPNESTSIVPFFNRNTLSKSNFNQDDAMGLVLSAASLRGWT TGSGMEGPPAPVGAEGGSNTETVSTLPWSLFTKSPRRRMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEMKCYVNPDFKYK DSKWDFGFSLFDDEDHDQDDDGDGNASYPI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27280			Zim17-type zinc finger protein...		Lus10034555 [exp]	0	1
AT1G13990			unknown protein		Lus10037142 [exp]	1.4	0.8900
AT4G17900			PLATZ transcription factor fam...		Lus10020337 [exp]	2.4	0.8376
AT4G04770		ABCI8, ATNAP1, ...	LONG AFTER FR, ARABIDOPSIS THA...		Lus10034750 [exp]	2.8	0.8597
AT4G04860		DER2.2	DERLIN-2.2 (.1)		Lus10006771 [exp]	3.9	0.8568
AT3G03440			ARM repeat superfamily protein...		Lus10017635 [exp]	4.6	0.8045
AT1G12910		LWD1, ATAN11	LIGHT-REGULATED WD 1, ANTHOCYA...		Lus10041500 [exp]	5.7	0.8245
AT1G55000			peptidoglycan-binding LysM dom...		Lus10004477 [exp]	6.3	0.8426
AT1G61560		ATMLO6, MLO6	MILDEW RESISTANCE LOCUS O 6, S...		Lus10041410 [exp]	6.7	0.8096
AT4G03030			Galactose oxidase/kelch repeat...		Lus10024874 [exp]	8.0	0.8468
AT2G20920			Protein of unknown function (D...		Lus10025079 [exp]	8.5	0.8196

Compare expression of checked genes

Lus10034555 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.