Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76140 1056 / 0 Prolyl oligopeptidase family protein (.1.2) AT1G20380 1026 / 0 Prolyl oligopeptidase family protein (.1) AT1G50380 176 / 4e-46 Prolyl oligopeptidase family protein (.1) AT1G69020 108 / 3e-24 Prolyl oligopeptidase family protein (.1) AT5G66960 78 / 1e-14 Prolyl oligopeptidase family protein (.1) AT5G36210 46 / 9e-05 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019994 [exp] 1282 / 0 AT1G76140 1008 / 0.0 Prolyl oligopeptidase family protein (.1.2) Lus10021235 [exp] 1140 / 0 AT1G76140 1184 / 0.0 Prolyl oligopeptidase family protein (.1.2) Lus10034558 [exp] 683 / 0 AT1G76140 565 / 0.0 Prolyl oligopeptidase family protein (.1.2) Lus10015387 [exp] 183 / 3e-48 AT1G50380 1096 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10032920 [exp] 174 / 2e-45 AT1G50380 1018 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10004631 [exp] 130 / 4e-31 AT1G69020 830 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10026683 [exp] 124 / 5e-29 AT1G69020 785 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10021834 [exp] 93 / 5e-23 AT1G76140 68 / 3e-15 Prolyl oligopeptidase family protein (.1.2) Lus10032378 [exp] 96 / 6e-20 AT1G69020 372 / 1e-116 Prolyl oligopeptidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G247300 [exp] 1088 / 0 AT1G76140 1206 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.002G014000 [exp] 1077 / 0 AT1G76140 1217 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.002G013900 [exp] 1075 / 0 AT1G76140 1165 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.005G247400 [exp] 1072 / 0 AT1G76140 1210 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.007G001300 [exp] 182 / 4e-48 AT1G50380 1149 / 0.0 Prolyl oligopeptidase family protein (.1) Potri.010G137801 [exp] 111 / 6e-25 AT1G69020 889 / 0.0 Prolyl oligopeptidase family protein (.1) Potri.007G035900 [exp] 102 / 5e-22 AT5G66960 1087 / 0.0 Prolyl oligopeptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF02897 [flax] [poplar] Peptidase_S9_N Prolyl oligopeptidase, N-terminal beta-propeller domain CL0028 [flax] [poplar] AB_hydrolase PF00326 [flax] [poplar] Peptidase_S9 Prolyl oligopeptidase family
Representative CDS sequence Show only first row Show all	>Lus10034556 pacid=23162856 polypeptide=Lus10034556 locus=Lus10034556.g ID=Lus10034556.BGIv1.0 annot-version=v1.0 ATGGGGCCGGTAGCTGGTGTTGAGGGTGGACTATGTTATCCAACAGCTCGCAAGGATGAATCTATCGTCGAGTATTACCATGGCGTCAAGGTTGCTGACC CCTTTAGATGGCTGGAGGATCCAGAATCGAAGGAAACGAACGAGTTCGTGGAAGAGCAAGTTAAGCTCAGCGATTCAGTGTTGAAGACGTGCGAGATGAT AGATAAGCTCAAGGAAAAGATAACAAAGATGATGGATTATCCTCGCTACGTTGATGCGCCGTTGAAAAGAGGGGACAGGTACTTCTATTCATACAACACC GGGCTTCAGCCCCAGGACGTTCTTTATGTCCAAGATGCGTTGGAAGGAAAGGGAGAGGTATTGCTGGATCCCAACCGACTAAGCGATGACGGGACTGTAG CAATGACCGATTATTCGGTAAGCGAGGATGGCAAATACTTGGCTTATGAGCTTAGCAACAGTGGCAGCGATTGGGTCACCATCAACCTCCTCTCTGTTGA CGACAAGACACTGCTCCAGGCTGACACTCTTTCATGGGTAAAGTTTACCCAGATCAATTGGACACATGATAGCAAAGGCTTCTTCTACTGCCGTTTCCCT GCTCCCAAAGATGGTGAAAAGTCGGATGCAGGTACAGAAACCAATATTAATCTCTATATGCAACTTTACTACCATTTTGTTGGTACAGATCAATCCCAGG ATATTTTGTGTTGGGGAGATAAACAACATCCTACCTACGTAGTCGGTGCCACTGTCACAGACGATGGCAAGTACCTTCTCCTCTACATCACAGATGGGGC TGATACAACCAACAAAGTATATTACTGTGATATCTTGGGGGGACTAGAAAGTTTTAAGGGAGGAAACAGTTTGCTCACTTTCACTAAGCTTGTCGATACC TTCGAGGCCAACTATAACGCCATTGCAAATGATGACACATTGTTTACTTTCCTAACCAACAAAGATGCTCCTTTATACAAACTAGTTCGGGTTGATTTGA ACGAACCCAGTTCATGGACTGATGTTGTTCCGCAATCTGACAAGGATGTACTGGAAAAGGCATATGCGGTTAATGGAGATCGATTGATAGTTTGTTATCT CAGCGATGTTAAGAGTGTGTTACAGATCAGAGACTTGGAGACAGGATCATATCTGCAGCAGCTTCCCATTGAAGTTGGTGCAGTGACTGCGATATCCACA CGGAGAAAGGAAAGTTCAGCATTTATGGCCTTTACAAGCTTTCTTTTCCCTGGCATCATCTACCAATGTGATTTCGAATCTGGCACTCCGGAACTGAAGA TATATAGGGAGATGAGTGTACCTGGATTCGATCGTGCAGAGTTCCAAGTGAATCAGGTTTTTGTGACTAGTAAGGACGGGACCAAGTTCCCGATGTTCAT CGGGTCAAAGAAAGACATAAAACTGGATGGATCACACCCATGCTTGCTGTATGGATACGGTGGATTTAGGTACAACAATACTCCAAATTTCACTGCAAAT CGGATAACACTGGGGAAGCATTTAGGAGTAGTTTTCTGCATTGCCAACATACGTGGTGGTGGAGAGTACGGTGAAGAATGGCACAAAGCAGGATCACTTG CCAGCAAGCAGAACGTCTTTGACGACTTCATCTCTGCCGCTGAATACCTCGTATCAGCTGGTTACACCACCCAGAAAAGGCTATGCATCGAAGGTCATAG CAACGGAGGCCTCCTCGTAGGTGCTTGCATAAATCAGAGACCAGATCTATTCGGATGCGCTCTGGCTCATGTTGGTGTTATGGACATGCTCCGATTCCAC TTGTTCACTATAGGCCATGCTTGGATTTCTGAATATGGCTGTTCAGAAAACGAGCAACAGTTCAATTGGCTGATCAAGTACTCTCCACTACACAATGTGA GGAGACCTTGGGAAATGAACACTGATGAGGCAATTCAGTACCCTCCCACCATGTTGCTGACTGCCGATCACGACGATCGAGTTGTTCCATTACACTCTCT GAAGTTGTTGGCGGTGACTGATAGACTTTTCCCTCCAATTCTCTCGACTGGAGACATAACCGTATCATGGTTTCTTGACTTTTCTTATTTTATGCAGACG TTGCAGAGTGTTCTGATCACCAGCTTGGAGAAGAGTCCCCAAACCAACCCAATAATGGGCCGGATTGATCAGAAATCAGGCCACGGGTATGGCCGTCCCA CTCAGAAAGAGATTGATATAGCTGCCGACTGTTATGGGTTCATGGCGAAGATGATGAATTTGGAGTGGACTGACTAG
AA sequence Show only first row Show all	>Lus10034556 pacid=23162856 polypeptide=Lus10034556 locus=Lus10034556.g ID=Lus10034556.BGIv1.0 annot-version=v1.0 MGPVAGVEGGLCYPTARKDESIVEYYHGVKVADPFRWLEDPESKETNEFVEEQVKLSDSVLKTCEMIDKLKEKITKMMDYPRYVDAPLKRGDRYFYSYNT GLQPQDVLYVQDALEGKGEVLLDPNRLSDDGTVAMTDYSVSEDGKYLAYELSNSGSDWVTINLLSVDDKTLLQADTLSWVKFTQINWTHDSKGFFYCRFP APKDGEKSDAGTETNINLYMQLYYHFVGTDQSQDILCWGDKQHPTYVVGATVTDDGKYLLLYITDGADTTNKVYYCDILGGLESFKGGNSLLTFTKLVDT FEANYNAIANDDTLFTFLTNKDAPLYKLVRVDLNEPSSWTDVVPQSDKDVLEKAYAVNGDRLIVCYLSDVKSVLQIRDLETGSYLQQLPIEVGAVTAIST RRKESSAFMAFTSFLFPGIIYQCDFESGTPELKIYREMSVPGFDRAEFQVNQVFVTSKDGTKFPMFIGSKKDIKLDGSHPCLLYGYGGFRYNNTPNFTAN RITLGKHLGVVFCIANIRGGGEYGEEWHKAGSLASKQNVFDDFISAAEYLVSAGYTTQKRLCIEGHSNGGLLVGACINQRPDLFGCALAHVGVMDMLRFH LFTIGHAWISEYGCSENEQQFNWLIKYSPLHNVRRPWEMNTDEAIQYPPTMLLTADHDDRVVPLHSLKLLAVTDRLFPPILSTGDITVSWFLDFSYFMQT LQSVLITSLEKSPQTNPIMGRIDQKSGHGYGRPTQKEIDIAADCYGFMAKMMNLEWTD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76140			Prolyl oligopeptidase family p...		Lus10034556 [exp]	0	1
AT5G48740			Leucine-rich repeat protein ki...		Lus10038174 [exp]	9.3	0.8123
AT1G64625	bHLH	bHLH157	Serine/threonine-protein kinas...		Lus10001527 [exp]	17.3	0.7331
AT2G34150		ATSCAR1, WAVE1,...	WISKOTT-ALDRICH SYNDROME PROTE...		Lus10013904 [exp]	19.9	0.7567
AT5G48740			Leucine-rich repeat protein ki...		Lus10038172 [exp]	20.1	0.7960
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Lus10004048 [exp]	20.8	0.7977
AT4G22285			Ubiquitin C-terminal hydrolase...		Lus10027746 [exp]	22.6	0.7649
AT5G18860		NSH3	nucleoside hydrolase 3, inosin...		Lus10012778 [exp]	23.1	0.7913
AT5G59190			subtilase family protein (.1)		Lus10000018 [exp]	24.0	0.7187
AT5G48740			Leucine-rich repeat protein ki...		Lus10025926 [exp]	31.3	0.7885
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10015284 [exp]	37.6	0.7554

Compare expression of checked genes

Lus10034556 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.