Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76140 565 / 0 Prolyl oligopeptidase family protein (.1.2) AT1G20380 533 / 0 Prolyl oligopeptidase family protein (.1) AT1G50380 170 / 3e-45 Prolyl oligopeptidase family protein (.1) AT1G69020 107 / 4e-24 Prolyl oligopeptidase family protein (.1) AT5G66960 81 / 1e-15 Prolyl oligopeptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034556 [exp] 683 / 0 AT1G76140 1056 / 0.0 Prolyl oligopeptidase family protein (.1.2) Lus10019994 [exp] 665 / 0 AT1G76140 1008 / 0.0 Prolyl oligopeptidase family protein (.1.2) Lus10021235 [exp] 615 / 0 AT1G76140 1184 / 0.0 Prolyl oligopeptidase family protein (.1.2) Lus10015387 [exp] 172 / 1e-45 AT1G50380 1096 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10032920 [exp] 164 / 6e-43 AT1G50380 1018 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10004631 [exp] 114 / 2e-26 AT1G69020 830 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10026683 [exp] 107 / 3e-24 AT1G69020 785 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10017568 [exp] 103 / 7e-23 AT5G66960 1124 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10021834 [exp] 90 / 7e-22 AT1G76140 68 / 3e-15 Prolyl oligopeptidase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G014000 [exp] 578 / 0 AT1G76140 1217 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.005G247300 [exp] 577 / 0 AT1G76140 1206 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.005G247400 [exp] 572 / 0 AT1G76140 1210 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.002G013900 [exp] 570 / 0 AT1G76140 1165 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.007G001300 [exp] 177 / 1e-47 AT1G50380 1149 / 0.0 Prolyl oligopeptidase family protein (.1) Potri.010G137801 [exp] 112 / 8e-26 AT1G69020 889 / 0.0 Prolyl oligopeptidase family protein (.1) Potri.007G035900 [exp] 100 / 5e-22 AT5G66960 1087 / 0.0 Prolyl oligopeptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF02897 [flax] [poplar] Peptidase_S9_N Prolyl oligopeptidase, N-terminal beta-propeller domain CL0028 [flax] [poplar] AB_hydrolase PF00326 [flax] [poplar] Peptidase_S9 Prolyl oligopeptidase family
Representative CDS sequence Show only first row Show all	>Lus10034558 pacid=23162778 polypeptide=Lus10034558 locus=Lus10034558.g ID=Lus10034558.BGIv1.0 annot-version=v1.0 ATGGGGTCGGTAGCATTATGTTATCCAGCAGCTCGCAAGGATGAGTCTACCGTCGAGTATTACCATGGCGTCAGGCTGGAGAATCCAGAATCGAAGGAAA CGAAAGAGTACGTGGAAGAGCAAGTGAAGCTGAGTGATACAGTGTTGAAGACTTGCGAGACGAAAGATAAGCTCAAGGAGAAGATAACAAAGATGATGGA CTATCCTCGCTACCTTGATGCGCCGTTGAAAAGAGGGGACAAGTACTTCTATTCATACAACACCAGCGTTCAGCCCCAGGGCGTTCTTTACGTACAGGAT GGGTTGGAAGGAAAGGGAGAGGTGTTGTTGGATCCGAATGCACTAAGCGATGACGGGACAGTGGCAATGCCCATTTATTCGGTAAGCGATGATGGCAAAT ACCTGGCGTACGAGCTCAGCTCCAGTGGCAGCGATTGGGTCACCATCAACCTCCTCTCTGTTGACGACAAGACACTGCTCCAGGCTGACACTCTTTCATG GGCAAAGTGGACCGAAATCAGTTGGACACATGATAGCAAAGGCTTCTTCTATTGCCGCTACCCTGCTCCCAAGTACGGGTTATGGGCAGCTGCTACAAAA GGGGAAGTGACATGGAAGATTGAAGAACTAAAAATCAGAGACTTGCAGACAGGATCGTATCTGCAGCAGCTTCCCATTGAAGTTGGCGCAGTGACTCTGG TATCTGCAAGGAGGAAGGACAGTTCAGCATTTATTGCCTTTGCAGGCTTTCTTTTCCCTGGCATCATCTACCAATGCGATTTCGAATCTGGCACTCCAGA ATTGAAGATATATAGGGAGATGAGTGTACCTGGATTCGATATTTCAGAGTTCCAAGTGAATCAGGTGTTTGTAACTAGTAAGGACAGGACCAAGTTCCCG ATGTTCATAGGGTCTAAGAAAGACATAAAATTGGACGGATCACACCCATGTTTGTTGTATGCATATGGCGGATTTGGGATCAATATTACTCCAGATTTCA AAGCAGCTCGGATAGCACTAGCGAAGCATTTAGGAACAGTGTTCTGCATTGCCAACATACGTGGTGGTGGAGAGTACGGTGAAAAATGGCACAAAGCAGG ATCACTTGCCAACAAGCAGAACGTCTTTGACGACTTTATCTCTGCCGCTGAATACCTCGTGTCAACTGGTTACACCAACCAGAAGAAGCTTTGCATCGAA GGTCTGAGCAATGGCGGCCTCCTCGTAGGTGCTTGCATAAATCAGAGACCAGATCTATTCGGATGCGCTCTGGCTCATGTTGGTGTTATGGACATGCTCC GATTCCACTTGTTCACTATAGGCCATGCTTGGATTTCTGAATATGGCTGTTCAGAAAACGACCAACAGTTCAATTGGCTGATCAAGTACTCTCCACTGCA CAATGTGAGGAGACCTTGGGAAATGAACACTGATGAGGCAATTCAGTACCCTCCCACCATGTTGCTTACTGCCGATCACGACGATCGAGTTGTTCCATTA CACTCTCTGAAGTTGTTGGCGACGTTGCAGAGTGTTCTGATCACCAGCTTGGAGAAGAGTCCCCAAACCAACCCAATAATTGGCCGGATTGATCAGAAAT CAGGCCACGGGTATGGCCGTCCCACTCAGAAAGAGATTGATATAGCTGCCGACTGTTATGGGTTCATGGCGAAGATGATGAATTTGGAGTGGACTGACTA G
AA sequence Show only first row Show all	>Lus10034558 pacid=23162778 polypeptide=Lus10034558 locus=Lus10034558.g ID=Lus10034558.BGIv1.0 annot-version=v1.0 MGSVALCYPAARKDESTVEYYHGVRLENPESKETKEYVEEQVKLSDTVLKTCETKDKLKEKITKMMDYPRYLDAPLKRGDKYFYSYNTSVQPQGVLYVQD GLEGKGEVLLDPNALSDDGTVAMPIYSVSDDGKYLAYELSSSGSDWVTINLLSVDDKTLLQADTLSWAKWTEISWTHDSKGFFYCRYPAPKYGLWAAATK GEVTWKIEELKIRDLQTGSYLQQLPIEVGAVTLVSARRKDSSAFIAFAGFLFPGIIYQCDFESGTPELKIYREMSVPGFDISEFQVNQVFVTSKDRTKFP MFIGSKKDIKLDGSHPCLLYAYGGFGINITPDFKAARIALAKHLGTVFCIANIRGGGEYGEKWHKAGSLANKQNVFDDFISAAEYLVSTGYTNQKKLCIE GLSNGGLLVGACINQRPDLFGCALAHVGVMDMLRFHLFTIGHAWISEYGCSENDQQFNWLIKYSPLHNVRRPWEMNTDEAIQYPPTMLLTADHDDRVVPL HSLKLLATLQSVLITSLEKSPQTNPIIGRIDQKSGHGYGRPTQKEIDIAADCYGFMAKMMNLEWTD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76140			Prolyl oligopeptidase family p...		Lus10034558 [exp]	0	1
AT5G02390		DAU1	DUO1-activated unknown 1, Prot...		Lus10036009 [exp]	1.4	0.9132
AT2G02000		GAD3	glutamate decarboxylase 3 (.1)		Lus10009116 [exp]	2.4	0.9108
AT5G36930			Disease resistance protein (TI...		Lus10024886 [exp]	3.2	0.9003
AT1G04610		YUC3	YUCCA 3 (.1)		Lus10032609 [exp]	3.5	0.9074
AT1G79840	HD	GL2	GLABRA 2, HD-ZIP IV family of ...		Lus10011440 [exp]	4.2	0.8918
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10028201 [exp]	4.5	0.9058
AT2G37670			Transducin/WD40 repeat-like su...		Lus10003974 [exp]	5.2	0.8545
AT3G59000			F-box/RNI-like superfamily pro...		Lus10034559 [exp]	5.3	0.8719
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Lus10014175 [exp]	7.0	0.8889
AT2G34930			disease resistance family prot...		Lus10016342 [exp]	8.4	0.8145

Compare expression of checked genes

Lus10034558 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.