Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42220 152 / 2e-39 Ubiquitin-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021830 [exp] 709 / 0 AT5G42220 595 / 0.0 Ubiquitin-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G013500 [exp] 246 / 4e-72 AT5G42220 602 / 0.0 Ubiquitin-like superfamily protein (.1) Potri.005G247900 [exp] 234 / 4e-68 AT5G42220 471 / 6e-152 Ubiquitin-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034562 pacid=23162779 polypeptide=Lus10034562 locus=Lus10034562.g ID=Lus10034562.BGIv1.0 annot-version=v1.0 ATGTCTGCCACAGCAGGCAATGGCGAAGGCACTCAAGCTCAACCGGGTCATGCTAGTGGTCCTGGTGGTGCTGTTCAAGTAAGAGTAGTGCCTGTGAGAA ATGTCGCTGCTGGAGTACCTCCACATTCTAGTGGCGTGGCAGTATCAGGTACAGAACAATCTGCTACTGTTGATCCACCAGCTGACCTGGCATCAATGTC TTCTATGGTAGCTCGGATCAATACACGGTTGAGAGATCTTATGGAGAACTTCCCAGGGCAAGGCCAAGCTGTACCAGGACCTGAAGGGCCTGCTGGTGGT AGTGATGCTGCTGGACAACAGGATTCTACTTTGGCTGTTGATAGAGCTGCAGAATCGGTTGGGTCCTTGCCTAGACTTGTATCTGAAGTTGACAATGAGA AGATGCAAGATGAAATTGTCCAAGTTAGCAGTAATGAAGAGAAAGATAACCTTACTACCTCAAAAGATGCGTCGTCTTGCTCAGTGTCATCTTCAAGTGG AGACGCTTCACAGAAGAAGGAAGGGAATCCAGAAAGAGCTGGTTCAAGCCATGATCTTCCTGAAGCTAAGGGTGCGCCTCTTGGCTTGGGTTTGGGGAAT TTGGAACGAAAGAAACGAGTTAAGCAGCAAAAAGCCACTGGCACAAACAGTGATTGCCAAACAGCAGATACACACGTTAATCAGAATGCTGACTTCATGG GAATGACTCCGCAGCAACTCTTGCAGACACTGGGCTCCCGAAGCTCTGGTACCAGGGTGGTTTCAAGTGACACACCCTCAGGTCAAGTGCCTCCCTTCAG GGTGAGTAGCGAGGGCATAGAACATGATACTGATGGACAGCTGGATGCTGCCAGTGCTGTGTCGGAAGCTCTGCGTAGCCCTGGTTTAGATAATTTGTTG GCAGGGGTTTCCCAGCATACTGGTATTGGTTCTCCCAATGTCTTGAGGAACATGCTGCAGGAGCTCACTCAGAACCCTCAGATCATGAACGCTGTCGGTC AAATCGCTCAGCAGGTCGACACCCAAGATATTGGGAACATGTTTGCAGGTGCAGGAAGAGGCCAAGGAGGTGGTGGTTTTGACCTCTCAAGGATGGTACA ACAGATGATGCCTGTTGTTTCCCAGGTATTGGGACAAGGTTCTGCATTTCCAGTCCCAGGGCCTGTACCCCAGAGGATTAATGCTGGAGCTCAAGAACCC AGTGACCAGAATGTTCAGGCAAACCTGCTTGATGTGGCTCAGAGGATTGAACACGGAGATGCACCTGAAGATATATTCCAAGGCATGGCAGAAAGTGCAG TTGCGCTTAGCGGCAGCGGTGTAATGGCACAAGATTTGAGCAACATGGATGATCTAGCTAATGAATACATGGCGATGCTACATGAGGACCTACAACGACG GTTTGGAGACGACCTTAACCATGATTGA
AA sequence Show only first row Show all	>Lus10034562 pacid=23162779 polypeptide=Lus10034562 locus=Lus10034562.g ID=Lus10034562.BGIv1.0 annot-version=v1.0 MSATAGNGEGTQAQPGHASGPGGAVQVRVVPVRNVAAGVPPHSSGVAVSGTEQSATVDPPADLASMSSMVARINTRLRDLMENFPGQGQAVPGPEGPAGG SDAAGQQDSTLAVDRAAESVGSLPRLVSEVDNEKMQDEIVQVSSNEEKDNLTTSKDASSCSVSSSSGDASQKKEGNPERAGSSHDLPEAKGAPLGLGLGN LERKKRVKQQKATGTNSDCQTADTHVNQNADFMGMTPQQLLQTLGSRSSGTRVVSSDTPSGQVPPFRVSSEGIEHDTDGQLDAASAVSEALRSPGLDNLL AGVSQHTGIGSPNVLRNMLQELTQNPQIMNAVGQIAQQVDTQDIGNMFAGAGRGQGGGGFDLSRMVQQMMPVVSQVLGQGSAFPVPGPVPQRINAGAQEP SDQNVQANLLDVAQRIEHGDAPEDIFQGMAESAVALSGSGVMAQDLSNMDDLANEYMAMLHEDLQRRFGDDLNHD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42220			Ubiquitin-like superfamily pro...		Lus10034562 [exp]	0	1
AT5G23490			unknown protein		Lus10019229 [exp]	6.9	0.7979
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Lus10016683 [exp]	21.7	0.7586
AT1G33980		ATUPF3, UPF3	Smg-4/UPF3 family protein (.1....		Lus10037347 [exp]	23.8	0.6214
AT4G12750			Homeodomain-like transcription...		Lus10016078 [exp]	26.4	0.7545
AT1G27170			transmembrane receptors;ATP bi...		Lus10038533 [exp]	27.5	0.7525
AT3G63340			Protein phosphatase 2C family ...		Lus10000491 [exp]	30.8	0.7516
AT5G15400			U-box domain-containing protei...		Lus10030697 [exp]	36.0	0.7473
AT3G51050			FG-GAP repeat-containing prote...		Lus10014275 [exp]	39.2	0.7463
AT5G51050		APC2	ATP/phosphate carrier 2, Mitoc...		Lus10016736 [exp]	39.9	0.7145
AT5G15680			ARM repeat superfamily protein...		Lus10035141 [exp]	53.2	0.7369

Compare expression of checked genes

Lus10034562 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.