Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42220 372 / 1e-120 Ubiquitin-like superfamily protein (.1) AT5G25270 149 / 4e-39 Ubiquitin-like superfamily protein (.1) AT2G17190 68 / 4e-12 ubiquitin family protein (.1) AT5G11080 67 / 5e-12 Ubiquitin-like superfamily protein (.1.2) AT2G17200 68 / 6e-12 DSK2 ubiquitin family protein (.1) AT2G36170 57 / 5e-10 Ubiquitin supergroup;Ribosomal protein L40e (.1) AT3G52590 57 / 5e-10 HAP4, ERD16, UBQ1, EMB2167 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) AT2G35635 56 / 2e-09 UBQ7, RUB2 RELATED TO UBIQUITIN 2, ubiquitin 7 (.1) AT4G05050 56 / 3e-09 UBQ11 ubiquitin 11 (.1.2.3.4) AT1G31340 56 / 3e-09 NEDD8, ATRUB1, RUB1 ARABIDOPSIS THALIANA RELATED TO UBIQUITIN 1, related to ubiquitin 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021830 [exp] 659 / 0 AT5G42220 595 / 0.0 Ubiquitin-like superfamily protein (.1) Lus10008806 [exp] 122 / 1e-29 AT5G23740 282 / 1e-89 ribosomal protein S11-beta (.1) Lus10040001 [exp] 121 / 4e-29 AT5G25270 328 / 3e-102 Ubiquitin-like superfamily protein (.1) Lus10023934 [exp] 63 / 2e-10 AT2G17200 565 / 0.0 ubiquitin family protein (.1) Lus10014433 [exp] 62 / 5e-10 AT2G17200 567 / 0.0 ubiquitin family protein (.1) Lus10008873 [exp] 57 / 7e-10 AT3G52590 261 / 5e-92 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Lus10018367 [exp] 56 / 1e-08 AT4G05320 452 / 4e-164 polyubiquitin 10 (.1.2.3.4.5.6) Lus10030894 [exp] 55 / 1e-08 AT2G47110 257 / 3e-89 ubiquitin 6 (.1.2) Lus10030595 [exp] 55 / 1e-08 AT2G47110 257 / 3e-89 ubiquitin 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G013500 [exp] 421 / 2e-138 AT5G42220 602 / 0.0 Ubiquitin-like superfamily protein (.1) Potri.005G247900 [exp] 419 / 6e-138 AT5G42220 471 / 6e-152 Ubiquitin-like superfamily protein (.1) Potri.018G115500 [exp] 182 / 1e-50 AT5G25270 352 / 2e-111 Ubiquitin-like superfamily protein (.1) Potri.006G059700 [exp] 181 / 5e-50 AT5G25270 343 / 3e-108 Ubiquitin-like superfamily protein (.1) Potri.005G100200 [exp] 73 / 1e-13 AT2G17200 478 / 2e-164 ubiquitin family protein (.1) Potri.016G077200 [exp] 57 / 6e-10 AT3G52590 260 / 2e-91 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Potri.012G024300 [exp] 57 / 6e-10 AT3G52590 260 / 2e-91 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Potri.015G007100 [exp] 57 / 6e-10 AT3G52590 260 / 2e-91 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Potri.004G194000 [exp] 57 / 7e-10 AT3G52590 210 / 3e-71 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Potri.009G166000 [exp] 61 / 9e-10 AT2G17200 547 / 0.0 ubiquitin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00240 [flax] [poplar] ubiquitin Ubiquitin family
Representative CDS sequence Show only first row Show all	>Lus10034563 pacid=23162908 polypeptide=Lus10034563 locus=Lus10034563.g ID=Lus10034563.BGIv1.0 annot-version=v1.0 ATGGCAGATCATCACCCCCATGAAGGATCTAGTACTAGCAATGTTTCTGGTGAAACATCGGACTCAAGTGTGCAGCTCAACGTGAAGACCTTAGATTCAC AGGTTTACAGTTTCCAGGTGGATAAGAAGATGTCAGTTGCAGCTTTCAAGGAGAAAATAGCTAGTGAAATTGGTGTGCCAGTTAATCAGCAGAGACTTAT TTTTCGAGGAAGGGTCTTGAAGGATGACCATTTTCTATCTGAACATCAGGTTGAGAATGGCCATACCTTGCATTTGGTTGCAAGGCAGTCTGCACCAACA CAACCATCATCTGAGACCAACTCTGGAGACTCAAATCCTAACAGTGGTAACCACGGAACCAATGCTAGTTTTGTTGGGCCCGGAAATTTCCCAGGGCAGA TTTCGCACAGTGTAATGCTAGGGACATTTAATGTTGGAGGTCAATCTGAGGGCATGGTTCCAGATCTATCGAGGGTTATTGGGGCTGTGCTGAACTCTAT AGGTGACATGGGAAGCATGCAGTTCCCACCTACGCCTGATGTTAGTGGCCAGACTCATCAAGGAGGTAATGGAAGCCTTGGAAATGTCGGTCAGAATCAA GTGGGAAACCAAACAGGAGGTCAACCGCAGCCTGGTCTTGCGTTCCAATCAGAGCCCCGTGTTGTACAAATTCCACTTGCTACAGCCATACCTATACCCA CTTTCCAATTGCCAATTCCTGATTCTCTGAATACCATCTCTGAGTTTTTGAGCCGGATGGAGCAAGTTCTCAGCCAAAATGGGTCTGAGCAGGGTGTACC TTCAACCACATCAGGAGCCACACCAGTGGTTGAGTTACCTTCCAATATTCAGGCATTACATGCAATAGAAGCGTTAAGCATTGTCTTGCGACAAGCTGAA CGACTTATTGGTAGTCATGCAGTAGCTTCATTGTCTCATCTTGCAGGGCGTCTGGAAGGAGAGGGCAGTTCTTCCGATCTCAACATCAGGAGCCAAATTC AAACAGAAACTGTGCAATCGGGTCTTGCAATGCAACATCTAGGTGCTCTGTTTTTGGAGCTGGGTCGCACTTTGTTAACATTGCGTATGGGACAATCTCC TGGAGAGTCCTCCATACATTCTGGTCCTGCCGTTTATATATCCCCATCAGGACCTAATCCCATAATGGCCCAGCCCTTTCCTTTGCAAACTCATACTCTG TTTGGTGGCATCGGTGTCCAACCAAATTCTGTGCCCGTTGCTCCTGTTGGTGTAGGAAATGCCCCAAGGCATGTAAATATACACATACATGCTGGTAGCA TATGCACTGTTGCTGTTTCACGCCAGAAATGGCCGACTTCAGTCAATTGA
AA sequence Show only first row Show all	>Lus10034563 pacid=23162908 polypeptide=Lus10034563 locus=Lus10034563.g ID=Lus10034563.BGIv1.0 annot-version=v1.0 MADHHPHEGSSTSNVSGETSDSSVQLNVKTLDSQVYSFQVDKKMSVAAFKEKIASEIGVPVNQQRLIFRGRVLKDDHFLSEHQVENGHTLHLVARQSAPT QPSSETNSGDSNPNSGNHGTNASFVGPGNFPGQISHSVMLGTFNVGGQSEGMVPDLSRVIGAVLNSIGDMGSMQFPPTPDVSGQTHQGGNGSLGNVGQNQ VGNQTGGQPQPGLAFQSEPRVVQIPLATAIPIPTFQLPIPDSLNTISEFLSRMEQVLSQNGSEQGVPSTTSGATPVVELPSNIQALHAIEALSIVLRQAE RLIGSHAVASLSHLAGRLEGEGSSSDLNIRSQIQTETVQSGLAMQHLGALFLELGRTLLTLRMGQSPGESSIHSGPAVYISPSGPNPIMAQPFPLQTHTL FGGIGVQPNSVPVAPVGVGNAPRHVNIHIHAGSICTVAVSRQKWPTSVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42220			Ubiquitin-like superfamily pro...		Lus10034563 [exp]	0	1
AT2G36850		CHOR, ATGSL8, A...	CHORUS, glucan synthase-like 8...		Lus10040892 [exp]	5.3	0.9625
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Lus10035973 [exp]	6.0	0.9594
AT5G15680			ARM repeat superfamily protein...		Lus10031961 [exp]	6.7	0.9563
AT5G27970			ARM repeat superfamily protein...		Lus10004116 [exp]	8.0	0.9546
AT5G07980			dentin sialophosphoprotein-rel...		Lus10040531 [exp]	11.2	0.9519
AT1G21630			Calcium-binding EF hand family...		Lus10035983 [exp]	12.3	0.9320
AT4G39420			unknown protein		Lus10006814 [exp]	13.2	0.9545
AT5G15680			ARM repeat superfamily protein...		Lus10035142 [exp]	13.9	0.9525
AT5G13010		EMB3011	embryo defective 3011, RNA hel...		Lus10009601 [exp]	15.2	0.9493
AT3G08850		ATRAPTOR1B, RAP...	HEAT repeat ;WD domain, G-beta...		Lus10025263 [exp]	16.0	0.9346

Compare expression of checked genes

Lus10034563 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.