Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38010 458 / 9e-156 Neutral/alkaline non-lysosomal ceramidase (.1.2) AT5G58980 455 / 7e-155 Neutral/alkaline non-lysosomal ceramidase (.1) AT1G07380 413 / 4e-138 Neutral/alkaline non-lysosomal ceramidase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005873 [exp] 426 / 4e-143 AT1G07380 1178 / 0.0 Neutral/alkaline non-lysosomal ceramidase (.1) Lus10021122 [exp] 424 / 1e-142 AT2G38010 1096 / 0.0 Neutral/alkaline non-lysosomal ceramidase (.1.2) Lus10017188 [exp] 397 / 8e-131 AT2G38010 1100 / 0.0 Neutral/alkaline non-lysosomal ceramidase (.1.2) Lus10021829 [exp] 241 / 1e-78 AT5G58980 125 / 2e-33 Neutral/alkaline non-lysosomal ceramidase (.1) Lus10001198 [exp] 187 / 2e-56 AT1G07380 384 / 4e-129 Neutral/alkaline non-lysosomal ceramidase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G013300 [exp] 582 / 0 AT2G38010 885 / 0.0 Neutral/alkaline non-lysosomal ceramidase (.1.2) Potri.009G040600 [exp] 462 / 4e-157 AT1G07380 1188 / 0.0 Neutral/alkaline non-lysosomal ceramidase (.1) Potri.016G110000 [exp] 461 / 1e-156 AT1G07380 1137 / 0.0 Neutral/alkaline non-lysosomal ceramidase (.1) Potri.001G247400 [exp] 452 / 3e-153 AT1G07380 1172 / 0.0 Neutral/alkaline non-lysosomal ceramidase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04734 [flax] [poplar] Ceramidase_alk Neutral/alkaline non-lysosomal ceramidase, N-terminal
Representative CDS sequence Show only first row Show all	>Lus10034564 pacid=23162728 polypeptide=Lus10034564 locus=Lus10034564.g ID=Lus10034564.BGIv1.0 annot-version=v1.0 ATGAAATTGAGCAAAAAGGCGGGAACCGTCAAGGCAACCGGCGGTATAACCTGCAGGAAAAAGACGAGCCGGGATTTCAGAGTGAGAAAAAGCAGGAAAT TCGTGGGAGCATTCTGCCAATCGAACGTCGGCGACGTGACGCCGAATGTCCTCGGAGCATTTTGCGTCGACACTGGGAATCCGTGCGATTTCAATCGGTC CTCCTGCGATGGGAATGACCAGCTCTGCGTGGGCCGCGGGCCTGGGTATCCGGATGAGACATTGAGCACTAAGATCATAGGGGAGAGACAATTCAAGAAG GCAGTGGAGTTGTTCACAACGGCCACGGATAAACTAGACACTAAAATTGATTATCGTCATGTCTACCTCAACTTCACCAGCATTGAAGTTGAGATCGAAG GTAAGGGTACCGTTACGACGTGTCCAGCGGCCGTTGGCCCGGGTTTTGCGGCCGGGACGACGGATGGGCCTGGCGCATTTGGGTTTCAACAGGGAGACAC AGAGATCGATCCATTCTTAAAGTTGGTTAGAGACTTGATAAAAAAGCCAACCAAATATCAGGAAGATTGCCAAAAACCGAAACCGGTTTTGCTCTCAACG GGAGAAATGTTTGACCCTTATCCATGGGCGCCGGCAATTCTACCGATACAGATACTTAGGCTGGGAAAGATGATCATTCTCTCTGTGCCTGGAGAGTTCA CAACAATGGCTGGTCGGGAACTAAGGGAGGCAGAAAAGGAGACACAAATAGCCAATGGGAGAGGAGAATTCGACGATAGCACCCATGTTGTCATTGCTGG CCTTACTAACACTTACTCCCAGTATATCTCCACTTTTGAGGAGTATCAACATCAAAGATATGAGTCGCCACCCGAAGGCGTGAAATTCGGGGACATAAAA CAGGACGTCGTAGGTCAATATTTCAAAAGTGGGGATCGAGTGAGTGCCACATTTTGGAGCGCTAACCCGAGATACGATCTGCTAACGGAAGGGACGTTTG CCGGAGTGGAGATGCTTCATCAAGGGGAGAAGAAGTGGGTTCCAATGTTCGACGACGATGACTTTAGCTTGCGTGTCAAGTGGGGAGTTGATAATGCAAC GAGTTCTAGCTTGGCAACTGTGGGGTGGGAGATACCAGCCGAGGCAAGTTCTGGTGTGTACAGGTTAAGACACTTTGGTTCAGCCAAGGAAACCATCATT TCTCAACTTGGTTATTTTACCGGTGCATCTAGTGGGTTTGCAGTTAGTTAA
AA sequence Show only first row Show all	>Lus10034564 pacid=23162728 polypeptide=Lus10034564 locus=Lus10034564.g ID=Lus10034564.BGIv1.0 annot-version=v1.0 MKLSKKAGTVKATGGITCRKKTSRDFRVRKSRKFVGAFCQSNVGDVTPNVLGAFCVDTGNPCDFNRSSCDGNDQLCVGRGPGYPDETLSTKIIGERQFKK AVELFTTATDKLDTKIDYRHVYLNFTSIEVEIEGKGTVTTCPAAVGPGFAAGTTDGPGAFGFQQGDTEIDPFLKLVRDLIKKPTKYQEDCQKPKPVLLST GEMFDPYPWAPAILPIQILRLGKMIILSVPGEFTTMAGRELREAEKETQIANGRGEFDDSTHVVIAGLTNTYSQYISTFEEYQHQRYESPPEGVKFGDIK QDVVGQYFKSGDRVSATFWSANPRYDLLTEGTFAGVEMLHQGEKKWVPMFDDDDFSLRVKWGVDNATSSSLATVGWEIPAEASSGVYRLRHFGSAKETII SQLGYFTGASSGFAVS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58980			Neutral/alkaline non-lysosomal...		Lus10034564 [exp]	0	1
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Lus10035312 [exp]	2.0	0.8753
AT3G53940			Mitochondrial substrate carrie...		Lus10012658 [exp]	4.7	0.8508
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10035628 [exp]	13.7	0.8396
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10031804 [exp]	14.6	0.8442
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Lus10028979 [exp]	18.0	0.7780
					Lus10025164 [exp]	21.8	0.8290
AT3G44910		ATCHX12	cation/H+ exchanger 12, cation...		Lus10040962 [exp]	22.4	0.7835
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10017910 [exp]	24.8	0.8324
AT2G01660		PDLP6	plasmodesmata-located protein ...		Lus10016710 [exp]	28.2	0.8293
AT2G34930			disease resistance family prot...		Lus10002758 [exp]	30.6	0.7197

Compare expression of checked genes

Lus10034564 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.