Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07380 355 / 1e-117 Neutral/alkaline non-lysosomal ceramidase (.1) AT2G38010 343 / 2e-113 Neutral/alkaline non-lysosomal ceramidase (.1.2) AT5G58980 291 / 2e-93 Neutral/alkaline non-lysosomal ceramidase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021122 [exp] 353 / 4e-117 AT2G38010 1096 / 0.0 Neutral/alkaline non-lysosomal ceramidase (.1.2) Lus10005873 [exp] 348 / 7e-115 AT1G07380 1178 / 0.0 Neutral/alkaline non-lysosomal ceramidase (.1) Lus10017188 [exp] 348 / 7e-114 AT2G38010 1100 / 0.0 Neutral/alkaline non-lysosomal ceramidase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G013300 [exp] 398 / 1e-134 AT2G38010 885 / 0.0 Neutral/alkaline non-lysosomal ceramidase (.1.2) Potri.016G110000 [exp] 354 / 2e-117 AT1G07380 1137 / 0.0 Neutral/alkaline non-lysosomal ceramidase (.1) Potri.009G040600 [exp] 351 / 4e-116 AT1G07380 1188 / 0.0 Neutral/alkaline non-lysosomal ceramidase (.1) Potri.001G247400 [exp] 340 / 8e-112 AT1G07380 1172 / 0.0 Neutral/alkaline non-lysosomal ceramidase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04734 [flax] [poplar] Ceramidase_alk Neutral/alkaline non-lysosomal ceramidase, N-terminal
Representative CDS sequence Show only first row Show all	>Lus10034565 pacid=23162760 polypeptide=Lus10034565 locus=Lus10034565.g ID=Lus10034565.BGIv1.0 annot-version=v1.0 ATGTTTCAGCGCTCACATTACCAAGTATTGCTACCAGTCCTCCTGGCACTTACTGTAAACGGACTTCATGTCAGTGGCAAGTTCTTGATCGGTACGGGGA GCTACGACATGACCGGACCTGCTGCTCAGGTGAACTTGATGGGCTATGCAAACATCCAACAGAATGCCGCCGGGATCCATTTCCGGCTAAGAGCTAGGAC TTTCATTGTCGCTGAAAGTGAGACTGGACCAAGGTTTGCTTTCGTCAATTTAGATGCTGGCATGGCTTCCCAGCTCGTCACAATCCGTGTGCTCGAGAGA CTGAAATACAGGTATGGAAGTCTGTATACACAAGAGAACGTGGCGATCAGCGGTACTCACACTCACGCTGGCCCAGGTGGCTATCTGCAGTACGTGCTTT ACATCGTCACTTCACTTGGCTTCGTCCGTCAATCCTTCGACGCCATTGTCGAAGCAATCGAGCTCAGCATAGTCCAGGCTCACAACAATCTCAAACCTGG CTCAGTGTTCATCAATACGGGCAAGTGGTTTGGGAAAGTAGAGAACGCGGGAATCAACAGGAGCCCAAGTGCTTACCTCACCAATCCACCAGAGGAAAGA GCAAAGTACGACTCCAATGTCGACAAGGAAATGACACTGCTGAAGTTCGTCGACGAGGGGACCGGTAACAGCGTCGGGGCCTTCAGCTGGTATGCCACTC ACGGGACCTCCATGTCCAGAGACAACAAGCTAATAAGCGGGGACAACAAAGGCGCCGCCGCCAGGTTCTTCGAGGATTGGTTCGCCTCCACCAACACCTC CACCTCCTCCACCGCCGACGCCGGTGCTATCATGCAATAG
AA sequence Show only first row Show all	>Lus10034565 pacid=23162760 polypeptide=Lus10034565 locus=Lus10034565.g ID=Lus10034565.BGIv1.0 annot-version=v1.0 MFQRSHYQVLLPVLLALTVNGLHVSGKFLIGTGSYDMTGPAAQVNLMGYANIQQNAAGIHFRLRARTFIVAESETGPRFAFVNLDAGMASQLVTIRVLER LKYRYGSLYTQENVAISGTHTHAGPGGYLQYVLYIVTSLGFVRQSFDAIVEAIELSIVQAHNNLKPGSVFINTGKWFGKVENAGINRSPSAYLTNPPEER AKYDSNVDKEMTLLKFVDEGTGNSVGAFSWYATHGTSMSRDNKLISGDNKGAAARFFEDWFASTNTSTSSTADAGAIMQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07380			Neutral/alkaline non-lysosomal...		Lus10034565 [exp]	0	1
AT2G26250		KCS10, FDH	FIDDLEHEAD, 3-ketoacyl-CoA syn...		Lus10028105 [exp]	1.0	0.8946
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10042903 [exp]	1.4	0.8940
AT2G33050		AtRLP26	receptor like protein 26 (.1)		Lus10019693 [exp]	2.2	0.8829
AT3G13040	GARP		myb-like HTH transcriptional r...		Lus10040583 [exp]	2.4	0.8889
AT3G13040	GARP		myb-like HTH transcriptional r...		Lus10040569 [exp]	3.5	0.8806
					Lus10014515 [exp]	6.0	0.8845
AT1G62350			Pentatricopeptide repeat (PPR)...		Lus10000892 [exp]	6.3	0.8318
					Lus10020900 [exp]	6.6	0.8603
AT1G66930			Protein kinase superfamily pro...		Lus10008362 [exp]	7.7	0.8648
AT1G30690			Sec14p-like phosphatidylinosit...		Lus10031176 [exp]	7.9	0.8700

Compare expression of checked genes

Lus10034565 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.