Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76180 57 / 5e-10 ERD14 EARLY RESPONSE TO DEHYDRATION 14, Dehydrin family protein (.1.2) AT1G20450 50 / 3e-07 LTI45, ERD10, LTI29 LOW TEMPERATURE INDUCED 45, LOW TEMPERATURE INDUCED 29, EARLY RESPONSIVE TO DEHYDRATION 10, Dehydrin family protein (.1.2) AT1G20440 42 / 0.0002 AtCOR47, RD17, COR47 cold-regulated 47 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021827 [exp] 177 / 1e-55 AT1G76180 106 / 1e-28 EARLY RESPONSE TO DEHYDRATION 14, Dehydrin family protein (.1.2) Lus10021240 [exp] 51 / 2e-07 AT1G76180 81 / 6e-19 EARLY RESPONSE TO DEHYDRATION 14, Dehydrin family protein (.1.2) Lus10005652 [exp] 48 / 1e-06 AT1G20450 81 / 1e-18 LOW TEMPERATURE INDUCED 45, LOW TEMPERATURE INDUCED 29, EARLY RESPONSIVE TO DEHYDRATION 10, Dehydrin family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G248100 [exp] 52 / 4e-08 AT1G76180 49 / 4e-07 EARLY RESPONSE TO DEHYDRATION 14, Dehydrin family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00257 [flax] [poplar] Dehydrin Dehydrin
Representative CDS sequence Show only first row Show all	>Lus10034568 pacid=23162738 polypeptide=Lus10034568 locus=Lus10034568.g ID=Lus10034568.BGIv1.0 annot-version=v1.0 ATGGCTGAGGAGATGAAGAACCAGGATGATCAGGTGGCCGGAGTTGAAACCACCAACCGCGGGATGTTCGATTTCTTGGGAAAGAAGAAGGATGAAGTAG ACCATGACGCTAAGCCGTCAGATCATCACCAAGAGGAAGCCATCTCCTCTCAGTTTGAGCAGAAGGTTCATGTCTCCGAGCCCCCTCATTATAAGGAAGC TGACGAGGAGGAAGTGAAAAAGGGCAGTCTTTTGGAGAAGCTTCACCGATCTTCCAGTAGCTCTAGCTCTTCGAGCGAGGAGGAAGTAGAGGAAGGAGGG GAGAAGAGGAGGAAGAAGAAGGACAAGAAGAAGAAGGAGAAGAAAGAGGAGGAGGACACGACAGTCCCCGTGGAGAAATGTGACGACGATGCCGTTTTGG TGCCAGAAGAGAAGAAGGGATTCATGGATAAGATCAAGGAGAAGCTTCCAGGGCATGGGAAGAAGGAAGAAGTAGCTGCTGGTGGTGCTGGTCATCCGGT GCCAACTTGTCACCCACCTCATGCTACTGAGTCAGCTGCGGAGAAGCAGGCAGAAGATGCCGCCGCCGCCGCCGCCAGTGGTGGGGAGAAGAAGGGGTTC TTGGAGAAGATTAAGGAGAAGCTGCCAGGGTATCACCCCAAAACCACTACTGCTGAGGAGGAGAAGGGGAAGGATAAAGAGAGTCATTAA
AA sequence Show only first row Show all	>Lus10034568 pacid=23162738 polypeptide=Lus10034568 locus=Lus10034568.g ID=Lus10034568.BGIv1.0 annot-version=v1.0 MAEEMKNQDDQVAGVETTNRGMFDFLGKKKDEVDHDAKPSDHHQEEAISSQFEQKVHVSEPPHYKEADEEEVKKGSLLEKLHRSSSSSSSSSEEEVEEGG EKRRKKKDKKKKEKKEEEDTTVPVEKCDDDAVLVPEEKKGFMDKIKEKLPGHGKKEEVAAGGAGHPVPTCHPPHATESAAEKQAEDAAAAAASGGEKKGF LEKIKEKLPGYHPKTTTAEEEKGKDKESH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20450		LTI45, ERD10, L...	LOW TEMPERATURE INDUCED 45, LO...		Lus10034568 [exp]	0	1
AT5G20680		TBL16	TRICHOME BIREFRINGENCE-LIKE 16...		Lus10039914 [exp]	1.4	0.8993
AT5G45850			Protein of unknown function (D...		Lus10015280 [exp]	3.2	0.8847
					Lus10037878 [exp]	4.2	0.8596
AT5G54540			Uncharacterised conserved prot...		Lus10014803 [exp]	4.6	0.8780
AT1G30360		ERD4	early-responsive to dehydratio...		Lus10022924 [exp]	6.7	0.8609
AT1G60790		TBL2	TRICHOME BIREFRINGENCE-LIKE 2,...		Lus10029126 [exp]	9.2	0.8565
AT5G60620		GPAT9	glycerol-3-phosphate acyltrans...		Lus10023947 [exp]	10.2	0.8521
AT4G34215			Domain of unknown function (DU...		Lus10014097 [exp]	10.2	0.8290
AT2G35660		CTF2B, CTF2A	FAD/NAD(P)-binding oxidoreduct...		Lus10011001 [exp]	10.6	0.8708
AT3G12490		ATCYS6, ATCYSB	ARABIDOPSIS THALIANA PHYTOCYST...		Lus10026117 [exp]	12.1	0.8139

Compare expression of checked genes

Lus10034568 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.