Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35230 689 / 0 BSK1 BR-signaling kinase 1 (.1) AT1G50990 586 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT5G41260 545 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT4G00710 535 / 0 BSK3 BR-signaling kinase 3 (.1) AT5G59010 529 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) AT3G54030 515 / 2e-178 Protein kinase protein with tetratricopeptide repeat domain (.1) AT1G63500 514 / 3e-178 Protein kinase protein with tetratricopeptide repeat domain (.1) AT5G46570 507 / 3e-175 BSK2 BR-signaling kinase 2 (.1) AT1G01740 473 / 6e-162 Protein kinase protein with tetratricopeptide repeat domain (.1.2) AT3G09240 461 / 2e-157 Protein kinase protein with tetratricopeptide repeat domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021823 [exp] 957 / 0 AT4G35230 802 / 0.0 BR-signaling kinase 1 (.1) Lus10003329 [exp] 582 / 0 AT4G35230 732 / 0.0 BR-signaling kinase 1 (.1) Lus10027743 [exp] 568 / 0 AT3G54030 824 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10035550 [exp] 568 / 0 AT3G54030 817 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10030383 [exp] 544 / 0 AT4G00710 770 / 0.0 BR-signaling kinase 3 (.1) Lus10001998 [exp] 540 / 0 AT1G63500 811 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10037856 [exp] 536 / 0 AT4G00710 764 / 0.0 BR-signaling kinase 3 (.1) Lus10040719 [exp] 535 / 0 AT5G59010 820 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Lus10008530 [exp] 534 / 0 AT1G63500 834 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G011800 [exp] 714 / 0 AT4G35230 836 / 0.0 BR-signaling kinase 1 (.1) Potri.005G249300 [exp] 710 / 0 AT4G35230 836 / 0.0 BR-signaling kinase 1 (.1) Potri.004G182800 [exp] 701 / 0 AT4G35230 899 / 0.0 BR-signaling kinase 1 (.1) Potri.009G142800 [exp] 694 / 0 AT4G35230 890 / 0.0 BR-signaling kinase 1 (.1) Potri.003G088900 [exp] 560 / 0 AT5G46570 820 / 0.0 BR-signaling kinase 2 (.1) Potri.001G104700 [exp] 555 / 0 AT1G63500 791 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.002G158400 [exp] 543 / 0 AT4G00710 820 / 0.0 BR-signaling kinase 3 (.1) Potri.014G082400 [exp] 543 / 0 AT4G00710 826 / 0.0 BR-signaling kinase 3 (.1) Potri.014G179300 [exp] 538 / 0 AT5G46570 814 / 0.0 BR-signaling kinase 2 (.1) Potri.006G093900 [exp] 535 / 0 AT3G54030 844 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10034573 pacid=23162769 polypeptide=Lus10034573 locus=Lus10034573.g ID=Lus10034573.BGIv1.0 annot-version=v1.0 ATGCATCCTAAAAAATTCACGGTCGGAGCCGTAGCCATTTTAGGGAGGGGAGGGCCTCTTCTTTCCAGTTCTCTTATCTCCTCTCTTTACGACTATGGTT TCTCCTTCACCCTCTCCATTTTCACACTGCTAAAAAACCACAACCAAGCAAGGTTTTCTGGCTGCCGTACCCGAGTCAACTCTCCGACTCGGCTGTCCGT CTCCTATTTATGGGGTGCTGCGAATCTTCCTTCTACAAGTCCCCTGGGGGCCAGAGAATCTCCCACCACAAACCCCCCCCCCGCCGATGACAATAAGCCC CCGGGCAACACCAATGATCACAACAAACATAACGACACCCATCCGGCCAACGGCGCCCACTCCGCCGTTCCCGGCTTCAAGGAGTTCTCTCTCGCCGACT TAAAAGCGGCCACCAACAACTTCAGCTCCGACTTCATAGTCTCCGAGAGCGGGGAGAAGGCTCCCAATGTTGTCTACAAGGGCCGCCTAGGGAACAGTAA CATCGATCGCAGTTGGATCGCCGTTAAGAAATTCACTAAAGTTGCCTGGCCTGATCCCAAGCAGTTCGCTGATGAAGCTTGGGGAGTTGGGAAGTTGAGG CATAAGAGGGTGGCGAATTTGGTAGGTTACTGCTGCGATGGAGACGAGAGGCTGCTTGTCGCTGAGTACATGCCTAATGATACTCTTGCCAAACACTTAT TCCATTGGGAAAATCAAACCATTGAGTGGGCCATGCGTTTGAGGGTTGCTTTGTACATTGCAGAAGCTTTAAATTATTGTAGTGCTGAAGGTCGTCCTCT GTACCATGACTTAAATGCTTACAGGGTTCTTTTTGATGAGAATGGAGATCCCAGACTTTCATGTTTTGGACTGATGAAGAATAGTAGGGATGGAAAAAGT TACAGCACCAATCTTGCTTACACGCCCCCTGAGTATTTGAAAAATGGAAGGGTCACCCCGGAGAGTGTTATGTTCAGCTTTGGTACAGTGCTCTTAGATC TTCTCAGTGGAAAGCACATTCCTCCTACTCATGCTCTTGAGATGATACGCGGCAGAAACATTCTTCTCTTGATGGATTCACATCTTGAAGGAAACTTTTC TACAGAGGAGGCAACTGTAGTATTTGATCTGGCGTCACGATGTCTGCAATATGAGCCCAGAGAGCGCCCGCTTACTAAAGATCTTGTGGAGACACTCGCT CCTCTGCAAAATAAGCCTGATGTCTCTTCTTCTCAAATGCTGGGAATATCAAAGCCTGAAGAAGCACCACCCACGCCACAACATCCTCTTTCTCCAATGG GTGATGCCTGCTCCCGAATGGACCTGACAGCTATACATCAGATTTTAGTGATGACACACTACAAAGATGATGAAGGAACCAACGAGCTGTCTTTCCAGGA ATGGACCCAACAAATGAGAGACATGTTGGAAGCTAGAAAGCGTGGTGATGTTTCCTTTCGTGACAAAGACTTCAAAGCTGCTATAGATTGTTACTCTCAG TGGAATCACCATCTTGCCGTCTTATTCTTGTTCTCTGATCTCACTGAATCCTCAAAGACTACCTCTGAGTTCCCAATCATGGAATTTCCTGTTGTGAATT CTGGACAGACTAAGTTATACTTGTTAGTGCTGAAACTCTTGAATTTCTTCGTCTCTTTGCAGTTCATAGATGTGGGAACAATGGTGTCTCCCACAGTGTA TGCACGGCGGAGTCTGTGCTATCTACTGTGTGATCAGCCGGACGCAGCACTTAGGGATGCAATGCAAGCGCAATGTGTGTACCCAGACTGGTCGACAGCA TTTTACATGCAGGCTGTGGCGCTGGCAAAACTGAATATGCACAAGGATGCAGCTGACATGTTGAATGAGGCTGCCACGCTAGAGGAGAAACGACAAAAGG GGAAAGCATCTTAA
AA sequence Show only first row Show all	>Lus10034573 pacid=23162769 polypeptide=Lus10034573 locus=Lus10034573.g ID=Lus10034573.BGIv1.0 annot-version=v1.0 MHPKKFTVGAVAILGRGGPLLSSSLISSLYDYGFSFTLSIFTLLKNHNQARFSGCRTRVNSPTRLSVSYLWGAANLPSTSPLGARESPTTNPPPADDNKP PGNTNDHNKHNDTHPANGAHSAVPGFKEFSLADLKAATNNFSSDFIVSESGEKAPNVVYKGRLGNSNIDRSWIAVKKFTKVAWPDPKQFADEAWGVGKLR HKRVANLVGYCCDGDERLLVAEYMPNDTLAKHLFHWENQTIEWAMRLRVALYIAEALNYCSAEGRPLYHDLNAYRVLFDENGDPRLSCFGLMKNSRDGKS YSTNLAYTPPEYLKNGRVTPESVMFSFGTVLLDLLSGKHIPPTHALEMIRGRNILLLMDSHLEGNFSTEEATVVFDLASRCLQYEPRERPLTKDLVETLA PLQNKPDVSSSQMLGISKPEEAPPTPQHPLSPMGDACSRMDLTAIHQILVMTHYKDDEGTNELSFQEWTQQMRDMLEARKRGDVSFRDKDFKAAIDCYSQ WNHHLAVLFLFSDLTESSKTTSEFPIMEFPVVNSGQTKLYLLVLKLLNFFVSLQFIDVGTMVSPTVYARRSLCYLLCDQPDAALRDAMQAQCVYPDWSTA FYMQAVALAKLNMHKDAADMLNEAATLEEKRQKGKAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Lus10034573 [exp]	0	1
					Lus10035120 [exp]	3.6	0.8465
AT5G55590		QRT1	QUARTET 1, Pectin lyase-like s...		Lus10016605 [exp]	6.2	0.8331
AT1G09815		POLD4	polymerase delta 4 (.1)		Lus10024978 [exp]	6.9	0.8188
AT3G09180			unknown protein		Lus10016953 [exp]	8.5	0.7981
AT2G36110			Polynucleotidyl transferase, r...		Lus10043049 [exp]	10.0	0.8243
AT3G05610			Plant invertase/pectin methyle...		Lus10006940 [exp]	10.5	0.7942
AT5G24170			Got1/Sft2-like vescicle transp...		Lus10019023 [exp]	10.9	0.7820
AT5G47750		PK5, D6PKL2	D6 protein kinase like 2 (.1)		Lus10016629 [exp]	11.0	0.7528
AT3G55770	LIM	WLIM2b	WLIM2b, GATA type zinc finger ...		Lus10028257 [exp]	13.9	0.7126
AT5G14230			unknown protein		Lus10022339 [exp]	14.8	0.7656

Compare expression of checked genes

Lus10034573 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.