Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G42430 591 / 0 unknown protein AT3G55760 199 / 8e-58 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021819 [exp] 759 / 0 AT1G42430 597 / 0.0 unknown protein Lus10021897 [exp] 191 / 3e-54 AT3G55760 538 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G249700 [exp] 599 / 0 AT1G42430 609 / 0.0 unknown protein Potri.002G011300 [exp] 587 / 0 AT1G42430 589 / 0.0 unknown protein Potri.008G159500 [exp] 194 / 2e-56 AT3G55760 561 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034575 pacid=23162782 polypeptide=Lus10034575 locus=Lus10034575.g ID=Lus10034575.BGIv1.0 annot-version=v1.0 ATGGCGGCCCCCACTTCCAGAAGTTTCCCCACTCACACTCACCTCCATTTCGACCTCCGACCAATAACTCGCTGGCCTCCCACTACCGTCTCTTGTTCTT GCTCCGACTCCGTTGTTCCGATTCGCAGAAACGCCGCTTCCTCCTGTAACCGCGCGGAGAAAGTTTCCCACAAGCTTCCTCGCCGGCACCGAATCCGAGC TTGTCCCGCATTGCCGTTTGCTTCTTCCCAGTCTCGAAGATTCGTCAATAAGCAAGGGAAGTTCTACCGGCGTTGTACTCCTAGGAACTCCGGCCCGCAA TCTCGAGATACTCCGCCCAAGAGAGATACCGGGATTGCGAATGAGAAAGACTGGGGGATCGACCTGGTAAATGAGATTGTTAATGAATCTGGCACTAATG AAGATGGCAGCACTTGGTACCGGGAAGGTGGGGAAGACTTGGGAGAAAAGGGTTACAGATGTAAGTGGACAACCATGGGAGGCAAATCACTTGATGGTTC TTCACAATGGAAAGAAACGTGGTGGGAGAAAAGTGACTGGACTGGATACAAGGAGCTGGGTGTAGAGAAATCAGGGAAGAATGCAGAAGGGGATTCTTGG TGGGAGACATGGCAAGAGGTGCTTCACCAAGATGAATGGAGTAATCTGGCAAGGATAGAGAGGAGTGCCCAGAAGCAAGCAAAATCAGGTACTGGGGAGG CTGGATGGTTTGAGAAATGGTGGGAAAAGTACGATGCTAAGGGCTGGACTGAGAAAGGAGCCCACAAATATGGTAGACTGAATGAGCAGTCCTGGTGGGA GAAGTGGGGAGAACATTATGATGGAAGAGGATCTGTTCTCAAATGGACAGATAAATGGGCTGAGACGGAACTGGGAACCAGGTGGGGAGACAAGTGGGAG GAGAAGTTCTTTGCTGGTATTGGCGCACGGCATGGAGAAACTTGGCATGTTTCTCCAAACGACGAACGTTGGACAAGGACATGGGGCGAAGAGCACTTAG GCAATGGCAAAGTTCACAAGTATGGAAAGAGCACAACGGGTGAATCCTGGGATATTGTAGTGGATGAGGAAACCTATTACGAGGCTGAACCACACTATGG ATGGGCGGATGTAGTGGGAGATTCGAACCAGCTGCTGTCAATACAACCTCGAGAGCGCCCACCTGGAGTCTTTCCAGACCTCGATTTTGGACCACCTTCT TCTGATGATGAACACATTCCTCCGACAACGCAATGA
AA sequence Show only first row Show all	>Lus10034575 pacid=23162782 polypeptide=Lus10034575 locus=Lus10034575.g ID=Lus10034575.BGIv1.0 annot-version=v1.0 MAAPTSRSFPTHTHLHFDLRPITRWPPTTVSCSCSDSVVPIRRNAASSCNRAEKVSHKLPRRHRIRACPALPFASSQSRRFVNKQGKFYRRCTPRNSGPQ SRDTPPKRDTGIANEKDWGIDLVNEIVNESGTNEDGSTWYREGGEDLGEKGYRCKWTTMGGKSLDGSSQWKETWWEKSDWTGYKELGVEKSGKNAEGDSW WETWQEVLHQDEWSNLARIERSAQKQAKSGTGEAGWFEKWWEKYDAKGWTEKGAHKYGRLNEQSWWEKWGEHYDGRGSVLKWTDKWAETELGTRWGDKWE EKFFAGIGARHGETWHVSPNDERWTRTWGEEHLGNGKVHKYGKSTTGESWDIVVDEETYYEAEPHYGWADVVGDSNQLLSIQPRERPPGVFPDLDFGPPS SDDEHIPPTTQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G42430			unknown protein		Lus10034575 [exp]	0	1
AT1G42430			unknown protein		Lus10021819 [exp]	1.0	0.9019
AT5G58340	MYB		myb-like HTH transcriptional r...		Lus10017320 [exp]	15.5	0.7517
AT3G11710		ATKRS-1	lysyl-tRNA synthetase 1 (.1)		Lus10001625 [exp]	17.7	0.7538
AT5G13570		TDT, DCP2, ATDC...	TRIDENT, decapping 2 (.1.2)		Lus10040400 [exp]	19.9	0.7379
AT5G44150			unknown protein		Lus10018632 [exp]	21.2	0.7413
AT1G48620		HON5	high mobility group A5 (.1)		Lus10032231 [exp]	21.6	0.7381
AT5G28770	bZIP	BZO2H3, ATBZIP6...	Arabidopsis thaliana basic leu...		Lus10006590 [exp]	26.1	0.7295
AT5G48820		ICK6, KRP3	KIP-RELATED PROTEIN 3, inhibit...		Lus10022796 [exp]	27.2	0.7259
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10004129 [exp]	29.9	0.7298
					Lus10007178 [exp]	33.9	0.7010

Compare expression of checked genes

Lus10034575 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.