Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20540 522 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT1G76260 483 / 6e-173 DWA2 DWD (DDB1-binding WD40 protein) hypersensitive to ABA 2 (.1) AT1G29260 63 / 6e-11 PEX7, ATPEX7 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) AT3G15980 63 / 9e-11 Coatomer, beta' subunit (.1.2.3.4.5) AT1G52360 63 / 1e-10 Coatomer, beta' subunit (.1.2) AT1G79990 63 / 1e-10 structural molecules (.1.2.3.4.5) AT4G29730 59 / 2e-09 MSI5, NFC5 nucleosome/chromatin assembly factor group C5 (.1) AT4G35050 58 / 2e-09 NFC3, MSI3 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) AT2G16780 58 / 3e-09 MSI02, NFC2, NFC02, MSI2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) AT2G19520 51 / 7e-07 ATMSI4, ACG1, NFC4, NFC04, FVE MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021818 [exp] 600 / 0 AT1G20540 499 / 4e-178 Transducin/WD40 repeat-like superfamily protein (.1) Lus10005074 [exp] 65 / 1e-11 AT4G35050 590 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10027848 [exp] 65 / 2e-11 AT4G35050 585 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10007274 [exp] 63 / 6e-11 AT1G29260 529 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Lus10029221 [exp] 63 / 8e-11 AT1G29260 531 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Lus10026094 [exp] 60 / 5e-10 AT3G15980 406 / 1e-135 Coatomer, beta' subunit (.1.2.3.4.5) Lus10011467 [exp] 61 / 6e-10 AT1G52360 1505 / 0.0 Coatomer, beta' subunit (.1.2) Lus10037525 [exp] 54 / 7e-08 AT1G52360 513 / 3e-176 Coatomer, beta' subunit (.1.2) Lus10039578 [exp] 49 / 4e-06 AT3G63460 1380 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G249800 [exp] 545 / 0 AT1G20540 616 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G011200 [exp] 520 / 0 AT1G20540 578 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G057600 [exp] 68 / 1e-12 AT1G29260 556 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Potri.001G179200 [exp] 63 / 1e-10 AT1G52360 1618 / 0.0 Coatomer, beta' subunit (.1.2) Potri.003G056300 [exp] 62 / 3e-10 AT1G52360 1653 / 0.0 Coatomer, beta' subunit (.1.2) Potri.011G066600 [exp] 57 / 2e-09 AT1G29260 379 / 3e-134 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Potri.009G135100 [exp] 57 / 7e-09 AT2G16780 612 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.004G175300 [exp] 56 / 1e-08 AT2G16780 593 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.018G068200 [exp] 50 / 1e-06 AT2G19520 812 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Potri.003G038800 [exp] 46 / 2e-05 AT2G19520 720 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10034576 pacid=23162880 polypeptide=Lus10034576 locus=Lus10034576.g ID=Lus10034576.BGIv1.0 annot-version=v1.0 ATGCAAGGAGGATCTTCCGGCGTCGGCTATGGTCTCAAGTATCAGGTTCACTTGATTAGATTATCGGCCGATGGAACTGAACTCATTTGCGACGGCTTGT TCTCTCATCCTAATGAGATCTGGGACCTTCGCTCGTGTCCATTTGATCAACGCATTTTCTCAACTGTCTATTCCAATGGCGAGTCATATGGAGCGGCAGT TTGGCAGATCCCTGAGCTATATGGCCAGCTGAATTCTCCTCAATTGGAAAAAGTTGCGTTCCTTGATGAGCATGTCAGGAAGATTAAGTGTGTTCTTTGG TGGCCATCTGGAAGAAGTGACAAGTTGGTCAGCATTGATGAGGAAAACCTGTTGTTGTGGAGCTTAGACTCCTCAAGGAAGACAGCTCAGGTGCAATCTA AGGAGTCAGCTGGTACATTGCACTACTTATCTGGCGGAGCATGGGATCCACATGATGTGAACGCTCTTGCAGCAACTTGTGAATCATCAGTCCAGTTTTG GGATCTGCGAACAATGCAGAAGACAAGTTCTATCGATGTCTCCCATGTCCGAACTACTGATTATGACCCAAAGAAGAATCATATACTTGTTACTGCAGAG GATGAAACTGGGATTCACGTATGGGATCTTAGGATGACAAAGGTTCCTATCCAAGAGTTTCCCGGACACACTCATTGGACTTGGGCCGTAACTTGCAACC CTGAGTATGATGGCATCGTTCTGAGTGGTGGCACTGACTCTGCTGTTAACTTATGGTTGGCTTCAACAGAATCTAGTGATGAGCTAACGTCGCAAAGTGT GGATTACTCGTCGACTCCGAAGGTTGATCCATTAGTTAACTCCTATACTGACTATGAAGACAGTGTATATGGGCTTGCCTGGAGTTTTCGTGAACCTTGG ATATTTGCATCTCTATCATACGATGGAAGGGTGGTTGTTGAATCAATAAAACCATTCATGTCCAGAAAGTAA
AA sequence Show only first row Show all	>Lus10034576 pacid=23162880 polypeptide=Lus10034576 locus=Lus10034576.g ID=Lus10034576.BGIv1.0 annot-version=v1.0 MQGGSSGVGYGLKYQVHLIRLSADGTELICDGLFSHPNEIWDLRSCPFDQRIFSTVYSNGESYGAAVWQIPELYGQLNSPQLEKVAFLDEHVRKIKCVLW WPSGRSDKLVSIDEENLLLWSLDSSRKTAQVQSKESAGTLHYLSGGAWDPHDVNALAATCESSVQFWDLRTMQKTSSIDVSHVRTTDYDPKKNHILVTAE DETGIHVWDLRMTKVPIQEFPGHTHWTWAVTCNPEYDGIVLSGGTDSAVNLWLASTESSDELTSQSVDYSSTPKVDPLVNSYTDYEDSVYGLAWSFREPW IFASLSYDGRVVVESIKPFMSRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20540			Transducin/WD40 repeat-like su...		Lus10034576 [exp]	0	1
AT4G08520			SNARE-like superfamily protein...		Lus10037624 [exp]	2.0	0.8201
AT5G14670		ATARFA1B	ADP-ribosylation factor A1B (....		Lus10013021 [exp]	5.0	0.7541
AT5G38700			unknown protein		Lus10025041 [exp]	6.5	0.7469
AT3G66654			Cyclophilin-like peptidyl-prol...		Lus10012005 [exp]	7.5	0.7421
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Lus10019916 [exp]	8.3	0.7631
AT4G08520			SNARE-like superfamily protein...		Lus10006883 [exp]	8.4	0.7740
AT4G01897			unknown protein		Lus10038061 [exp]	8.5	0.7620
AT2G30410		TFCA, KIS	TUBULIN FOLDING FACTOR A, tubu...		Lus10031323 [exp]	11.4	0.7176
AT3G66654			Cyclophilin-like peptidyl-prol...		Lus10016265 [exp]	13.7	0.7446
AT1G42480			unknown protein		Lus10030732 [exp]	14.8	0.6931

Compare expression of checked genes

Lus10034576 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.