Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14820 253 / 2e-85 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT1G01630 146 / 2e-43 Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G08690 67 / 3e-13 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G75170 67 / 4e-13 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT5G63060 66 / 1e-12 Sec14p-like phosphatidylinositol transfer family protein (.1) AT1G05370 62 / 3e-11 Sec14p-like phosphatidylinositol transfer family protein (.1) AT1G19650 61 / 6e-11 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT2G21520 56 / 3e-09 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G36640 56 / 4e-09 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G22180 55 / 6e-09 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001584 [exp] 328 / 4e-115 AT1G14820 320 / 2e-111 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10003699 [exp] 322 / 7e-113 AT1G14820 316 / 1e-109 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10021817 [exp] 171 / 2e-53 AT1G14820 164 / 3e-50 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10040252 [exp] 144 / 2e-42 AT1G01630 319 / 8e-111 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10004684 [exp] 141 / 2e-41 AT1G01630 326 / 2e-113 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10022428 [exp] 140 / 4e-41 AT1G01630 323 / 1e-112 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10016733 [exp] 139 / 6e-41 AT1G01630 325 / 2e-113 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10010804 [exp] 63 / 1e-11 AT1G75170 393 / 7e-139 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10016312 [exp] 62 / 2e-11 AT1G75170 387 / 2e-136 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G135600 [exp] 300 / 7e-104 AT1G14820 323 / 2e-112 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.010G105400 [exp] 294 / 1e-101 AT1G14820 326 / 1e-113 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.015G023000 [exp] 245 / 3e-82 AT1G14820 276 / 5e-94 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.001G068000 [exp] 159 / 1e-48 AT1G01630 361 / 3e-127 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.003G162100 [exp] 157 / 7e-48 AT1G01630 356 / 2e-125 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.017G063966 [exp] 144 / 3e-42 AT1G01630 340 / 2e-118 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.010G105100 [exp] 112 / 7e-32 AT1G14820 113 / 3e-32 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.002G261000 [exp] 69 / 5e-14 AT1G75170 427 / 3e-152 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.015G080100 [exp] 67 / 2e-13 AT5G63060 318 / 3e-110 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.002G032600 [exp] 61 / 7e-11 AT2G21520 731 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0512 [flax] [poplar] CRAL_TRIO PF00650 [flax] [poplar] CRAL_TRIO CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Lus10034577 pacid=23162868 polypeptide=Lus10034577 locus=Lus10034577.g ID=Lus10034577.BGIv1.0 annot-version=v1.0 ATGAACAGCGACAAGGCTGCTGAGATGTTCGTGCAGTGGCAGAAATGGAGGGAATCTTTTGTACCAAACGGGTTCATCTCGGATTCTGAAGTAGCTGATG AATTGGCAGCTAAGAAGGTTTACTTACAAGGGCTATCAATAGAAGGATGCCCAGTGTTGGTTGTCGCCATCAGGAAGCATTGTCCATCTAAGGATCAGCT TCAATTCAAGAAGTTCATAGTTCATCTGTTGGATAAAACTATTGCCAGCTCATTCAATGGAAGAGAGAGAGGAAATGAGAAGCTGGTGGCCATCTTGGAT CTGCACCAACTTGCATACAAGAACGTCGATGCTCGTGGCTTGATCACCGGTTTTCAGTTTTTGCAGGCTTACTACCCAGAGCGATTGCACAAGTTGTACA TATTAAACATGCCACGATTCTTCGTGAGCGTGTGGAGGATTGTGTCGCGCTTCCTTGAGAAGGCAACGCTAGACAAGATAATGATAGTGAAGAACGAGAA AGAGATGAGAGCTTTTGTGGGGGAAGTAGGGGAAGAGACATTGCCAGAAGAGTATGGAGGGCGGACTAAGCTTGTGGCAATTCAGGATGTCACTTTGCCC CCATTACAAGACCTGAGTTTGCTCTTGGAGAAACAAGAATAA
AA sequence Show only first row Show all	>Lus10034577 pacid=23162868 polypeptide=Lus10034577 locus=Lus10034577.g ID=Lus10034577.BGIv1.0 annot-version=v1.0 MNSDKAAEMFVQWQKWRESFVPNGFISDSEVADELAAKKVYLQGLSIEGCPVLVVAIRKHCPSKDQLQFKKFIVHLLDKTIASSFNGRERGNEKLVAILD LHQLAYKNVDARGLITGFQFLQAYYPERLHKLYILNMPRFFVSVWRIVSRFLEKATLDKIMIVKNEKEMRAFVGEVGEETLPEEYGGRTKLVAIQDVTLP PLQDLSLLLEKQE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14820			Sec14p-like phosphatidylinosit...		Lus10034577 [exp]	0	1
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10004517 [exp]	2.2	0.9541
AT4G13180			NAD(P)-binding Rossmann-fold s...		Lus10010673 [exp]	3.5	0.9531
AT5G14420		RGLG2	RING domain ligase2 (.1.2.3.4)		Lus10033491 [exp]	4.0	0.9333
AT3G10915			Reticulon family protein (.1.2...		Lus10034224 [exp]	4.9	0.9486
AT1G07570		APK1A	Protein kinase superfamily pro...		Lus10002697 [exp]	5.5	0.9456
AT4G10300			RmlC-like cupins superfamily p...		Lus10035660 [exp]	5.7	0.9432
AT4G27450			Aluminium induced protein with...		Lus10033418 [exp]	6.7	0.9414
AT4G27290			S-locus lectin protein kinase ...		Lus10014811 [exp]	7.7	0.9472
AT2G12646			PLATZ transcription factor fam...		Lus10008031 [exp]	8.8	0.9343
AT5G05340			Peroxidase superfamily protein...		Lus10029062 [exp]	9.5	0.9451

Compare expression of checked genes

Lus10034577 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.