Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01690 1090 / 0 ARM repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021813 [exp] 1322 / 0 AT2G01690 1112 / 0.0 ARM repeat superfamily protein (.1.2) Lus10001587 [exp] 1174 / 0 AT2G01690 1096 / 0.0 ARM repeat superfamily protein (.1.2) Lus10003702 [exp] 1153 / 0 AT2G01690 1093 / 0.0 ARM repeat superfamily protein (.1.2) Lus10003679 [exp] 644 / 0 AT2G01690 614 / 0.0 ARM repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G134600 [exp] 1192 / 0 AT2G01690 1070 / 0.0 ARM repeat superfamily protein (.1.2) Potri.010G106700 [exp] 1170 / 0 AT2G01690 1076 / 0.0 ARM repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11916 [flax] [poplar] Vac14_Fig4_bd Vacuolar protein 14 C-terminal Fig4p binding CL0020 [flax] [poplar] TPR PF02985 [flax] [poplar] HEAT HEAT repeat
Representative CDS sequence Show only first row Show all	>Lus10034578 pacid=23162703 polypeptide=Lus10034578 locus=Lus10034578.g ID=Lus10034578.BGIv1.0 annot-version=v1.0 ATGGCCGACGCGCTTTCTGTAATTCCGGCCAACGTTCTCCGCAATTTGTCCGATAAGCTCTACGAGAAGCGCAAGAATGCTGCTCTCGAGGTTGAGGGGA TAGTGAAGCAGCTAGCCGCCGCTGGCGATCATGATAAGATATCGTCTGTTATCCAGTTGTTGACGCAGGAGTACACATACTCTCCGCAAGCTAACCACCG CAAGGGAGGTTTGATAGGTTTGGCTGCTGCAACTGTAGGCTTGACATCAGAAGCAGCTCAGCATCTTGAGCAAATTGTGCCTCCTGTGCTTCATTCATTC TCTGACCAAGATAGTAGAGTCCGCTATTATGCGTGCGAAGCTTTATATAACATTGCAAAGGTTGTGAGAGGGGATTTCATTGTTTTTTTTAATCAAATAT TTGATGCTCTCTGCAAGCTTTCTGCAGATTCAGATGCCAACGTACAAAGTGCTGCCCATCTGTTAGATCGTCTTGTGAAAGACATTGTCACAGAAAGTGA TCAATTCAGCATCGAAGAATTTATCCCACTGTTGAGGGAACGTATGAATGTGCTGAATCCCTATGTCCGCCAATTTTTGGTAGGATGGATTACAGTTTTG GATAGCGTTCCGGATATCGATATGCTGGGTTTTCTTCCAGATTTTCTCGATGGTTTGTTCAATATGTTGAGCGATTCTAGCCATGAAATACGTCAGCAAG CTGATTCTGCACTTTCAGAGTTTCTCCAAGAAATCAAGAATTCACCATCTGTAGATTATGGTCGAATGGCTGAGATATTAGTGCAAAGGGCGGCTTCATC TGACGAATTTACTCGACTGACAGCTATCACATGGATAAATGAATTTGTGAAACTTGGCGGGGACCAACTTGTGCCTTATTATGCTGATATTCTTGGAGCG ATTTTGCCTTGTATTTCCGACAAAGAAGAAAAGATTAGAGCGGTTGCTCGTGAAACCAATGAAGAGCTCCGTGCTATCAATGCTGTTCCAGCAGAAGGGT TTGACGTTGGAGCAATTCTCTCTATTGCAAGGAGGCAACTGTCTAGTGAGTGGGAGGGTACAAGGATTGAGGCGTTGCACTGGATATCTGCTCTTTTGAT CAGACATCGGATTGAGGTCTTAAACTTTCTGGATGACATATTTGATACTCTCTTGAAAGCACTGTCAGACCCTTCTGATGAGGTAGTCCTGCTTGTTCTG GACATTCATGCCTGCATTGCAAAGGATCCACAACATTTTCGCCAACTAGTGGTATTCTTAATGCATAACTTTCGCATTGATAATTCTCTTCTGGAAAAGC GTGGCGCTTTGATTATTAGACGTCTCTGTGTGCTGCTGGATGCTGAAAGGGTATATAGGGAACTGTCAAAAATACTAGAGGGGGAAGCAGACCTAGATTT TGCTTCTATTATGGTTCAGGCTTTGAATTTGATTTTGCTTACGTCCTCCGAATTAGCTGAGCTCCGGGATTTGTTGAAACAGTCACTGGTCAATGCAGCA GGGAGAGATTTATTTCTATCACTGTATGCTTCATGGAGCCATTCACCGATGGCCATCATAAGCCTTTGCTTGTTAGTGCAGATGTACCAGCATGCCAGTG CCGTGATACAATCACTTACAGAGGAGGATATTAATGTGAAATTCTTAGTACAGCTGGACAAACTCATTCGTCTGCTTGAGACTCCGATTTTTGCTTACCT AAGGCTGCAGCTACTCGAGCCAGGTAGATACACATGGTTGTTGAAAGCCTTGTACGGTCTTCTGATGTTACTTCCCCAGCAAAGTGCCGCTTTTAAGATT CTAAGGACTCGATTAAAGACTGTGCCTTCGTACTCTTTTGGTGGTGATCAGTTTATTAAGCGGACATCTTCAGGAAACCCGTACTCCCAAATTCTACATC ACAGTCAAAGCGGATCACAGATCTCGGAGGACGGCGATGCAGGGCAGGACATGGGGCACTCTAAATCTCAAAATGGAATAAACTTCACTTCAAAGTTGCA GCAGTTTGAGCAAGTTCAGCGCCAACACCGTATCCATGCTAGAGAGCAGGCCCATTCCCGTAAAACTTTCACTTCGACTCCATCAGAAAAGGAGGCGCAG AGGTCGGAAGAATCGTCTTCATCGACTGTAGAAGTAAATAGGATGCCATCAAGATCAACAAGGAAAGGTCCAGGGCAGTTGCAACTATAA
AA sequence Show only first row Show all	>Lus10034578 pacid=23162703 polypeptide=Lus10034578 locus=Lus10034578.g ID=Lus10034578.BGIv1.0 annot-version=v1.0 MADALSVIPANVLRNLSDKLYEKRKNAALEVEGIVKQLAAAGDHDKISSVIQLLTQEYTYSPQANHRKGGLIGLAAATVGLTSEAAQHLEQIVPPVLHSF SDQDSRVRYYACEALYNIAKVVRGDFIVFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVL DSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALSEFLQEIKNSPSVDYGRMAEILVQRAASSDEFTRLTAITWINEFVKLGGDQLVPYYADILGA ILPCISDKEEKIRAVARETNEELRAINAVPAEGFDVGAILSIARRQLSSEWEGTRIEALHWISALLIRHRIEVLNFLDDIFDTLLKALSDPSDEVVLLVL DIHACIAKDPQHFRQLVVFLMHNFRIDNSLLEKRGALIIRRLCVLLDAERVYRELSKILEGEADLDFASIMVQALNLILLTSSELAELRDLLKQSLVNAA GRDLFLSLYASWSHSPMAIISLCLLVQMYQHASAVIQSLTEEDINVKFLVQLDKLIRLLETPIFAYLRLQLLEPGRYTWLLKALYGLLMLLPQQSAAFKI LRTRLKTVPSYSFGGDQFIKRTSSGNPYSQILHHSQSGSQISEDGDAGQDMGHSKSQNGINFTSKLQQFEQVQRQHRIHAREQAHSRKTFTSTPSEKEAQ RSEESSSSTVEVNRMPSRSTRKGPGQLQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01690			ARM repeat superfamily protein...		Lus10034578 [exp]	0	1
AT1G23870		ATTPS9	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10029175 [exp]	1.0	0.9619
AT1G28480		roxy19, GRX480	Thioredoxin superfamily protei...		Lus10013962 [exp]	2.2	0.9461
AT4G26140		BGAL12	beta-galactosidase 12 (.1.2)		Lus10006009 [exp]	2.4	0.9529
AT1G77660			Histone H3 K4-specific methylt...		Lus10008325 [exp]	2.4	0.9445
AT1G23870		ATTPS9	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10012990 [exp]	5.2	0.9464
AT3G16350	MYB		Homeodomain-like superfamily p...		Lus10006826 [exp]	5.9	0.9408
AT4G30790			unknown protein		Lus10005509 [exp]	6.3	0.9373
AT1G18330	MYB	RVE7, EPR1	REVEILLE 7, EARLY-PHYTOCHROME-...		Lus10031322 [exp]	6.5	0.9200
AT5G20950			Glycosyl hydrolase family prot...		Lus10010656 [exp]	7.5	0.9462
AT5G05140			Transcription elongation facto...		Lus10039000 [exp]	10.6	0.9236

Compare expression of checked genes

Lus10034578 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.