Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01680 739 / 0 Ankyrin repeat family protein (.1) AT1G07710 355 / 1e-116 Ankyrin repeat family protein (.1) AT3G12360 357 / 2e-116 ITN1 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) AT2G31820 355 / 6e-115 Ankyrin repeat family protein (.1) AT3G09550 352 / 3e-114 Ankyrin repeat family protein (.1) AT5G60070 342 / 2e-111 ankyrin repeat family protein (.1) AT1G05640 333 / 7e-107 Ankyrin repeat family protein (.1) AT5G02620 328 / 5e-106 ATANK1, ANK1 ankyrin-like1 (.1) AT5G54710 142 / 4e-36 Ankyrin repeat family protein (.1) AT1G34050 139 / 3e-35 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021814 [exp] 1045 / 0 AT2G01680 771 / 0.0 Ankyrin repeat family protein (.1) Lus10003308 [exp] 379 / 7e-125 AT3G12360 981 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10015224 [exp] 377 / 9e-125 AT1G07710 727 / 0.0 Ankyrin repeat family protein (.1) Lus10005432 [exp] 375 / 5e-124 AT1G07710 720 / 0.0 Ankyrin repeat family protein (.1) Lus10015037 [exp] 363 / 1e-118 AT3G09550 849 / 0.0 Ankyrin repeat family protein (.1) Lus10008329 [exp] 363 / 2e-118 AT2G31820 854 / 0.0 Ankyrin repeat family protein (.1) Lus10023460 [exp] 354 / 9e-116 AT3G12360 929 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10003986 [exp] 345 / 1e-111 AT3G09550 831 / 0.0 Ankyrin repeat family protein (.1) Lus10040335 [exp] 313 / 9e-100 AT3G12360 868 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G106800 [exp] 847 / 0 AT2G01680 778 / 0.0 Ankyrin repeat family protein (.1) Potri.008G134500 [exp] 844 / 0 AT2G01680 750 / 0.0 Ankyrin repeat family protein (.1) Potri.007G099600 [exp] 369 / 5e-122 AT1G07710 745 / 0.0 Ankyrin repeat family protein (.1) Potri.010G212700 [exp] 369 / 2e-121 AT3G12360 858 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.017G006800 [exp] 367 / 3e-120 AT2G31820 868 / 0.0 Ankyrin repeat family protein (.1) Potri.006G214500 [exp] 367 / 4e-120 AT3G12360 742 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.008G048400 [exp] 366 / 4e-120 AT3G12360 862 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.007G145200 [exp] 360 / 1e-116 AT2G31820 751 / 0.0 Ankyrin repeat family protein (.1) Potri.005G069400 [exp] 353 / 8e-116 AT1G07710 676 / 0.0 Ankyrin repeat family protein (.1) Potri.006G214600 [exp] 351 / 6e-115 AT1G07710 565 / 0.0 Ankyrin repeat family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034579 pacid=23162850 polypeptide=Lus10034579 locus=Lus10034579.g ID=Lus10034579.BGIv1.0 annot-version=v1.0 ATGGAGTCCAAGTCACTCCGATTCTTAGCTCACCAGTCCTTCTTCTCCGCTGTACGCTCAGCCGATCTTCCCACTCTCAAGCAGATTATCGACAAGCTTC ACAAGGATCACAGCTCCTCCTCATCCTCCTCTGGTGGTTCTGCTTCTTCTTCTTCATCTTCGGCGTCGCCGGTGACTGATCTGATGGCGTTGCAGAACGA CGCCGGAGAGACGGCCCTGTACATAGCTGCTGACAACAACCTGGGAGAGGTTTTCGCTTACTTGATTAGGCTGTGTGATGTAGAAGCTCTCAAGATCAGG TCCAAGTCTGGCATCGATGTCTTCCATCTCGCTGCTAAGAAGGGCCACTTAGGTATTGTGAAGGAGATATTGGGAAGATGGCCTGAGCTCTGCAAGATAT GTGATTCCTCGAATACCAGCCCGCTTTACTCAGCAGCGGTTCAAGATCATTTGGAGGTGGTAAATGCGATCTTGGACGTTGACCTGAGCACCATTAGGAT AGTGAGGAAAAACGGCAAGACGGCGTTGCACAATGCTGCGAGATATGGCCTTCTTCGAGTGGCGAAGTTGCTTATGGAACGTGATCCAGGGATTGTTGCA ATCAAAGATAAGAAAGGTCAGACTGCACTTCATATGGCTGTTAAGGGTCAGTGTACTTCTGTTGTGGAGGAGCTTCTCCAGACTGATATCTCTGTACTCA ATGAGCGTGACAAGAAGGGTAATACAGCCATTCATATCGCCACGAGGAAATCCCGTCCCCAGATAGTGAACGTGTTAGTAAGCTACACTTCTATGGACGT CAATGCAATCAACAACCAGAGCGAGACTGCAATGGATTTAGCAGATAAACTCCCATATGGTGAAGCAGGCTTGGAAATCCAAGAAGCACTTAGAGAAGTC GGTGCCAAGCATGCAAAGTTTGTCGGAAAGGCCGATGAAGCAATGGAACTCAAGAGAACCGTGAGCGACATCAAGCACGAAGTCCACTCTCAGCTCATCC AAAACGAGAAAACAAACAGACGAGTCTCCGGCATAGCCAAAGAACTCAGGAAACTCCACCGGGAGGCAGTCCAGAATACAACCAACTCCGTAACAGTCGT TGCAGTCCTTTTCGCATCTATAGCTTTCCTAGCCATCTTCAGCTTACCCGGGCAATACATCACGGGAGGACCAGAAGTTGGGAAGGCTAACGTAGCCGAC AACATTGGGTTCCAAGTTTTCTGCCTCTTGAACGCGACATCCCTCTTCATATCTCTGGCCGTGGTGGTTGTCCAGATCACGTTGGTTGCTTGGGATACCA CGGCTCAGAAACAGGTAGTTTCCGTGGTCAACAAGCTAATGTGGGCGGCTTGTGCTTGCACTTGCGGGGCATTTCTTGCAGTGGCGTTTGTTGTTGTTGG GAGAGGGAGTTCATGGATGGCCATCACCATAACCTTGTTGGGAGTGCCGATCCTGGTTGGGACATTGGCTTTCATGGGATACTTTGTTTTCAGGCAACAT TGCGGGTCGTTCAAGGACTCGCAGAGGCGGATCAAACGAGCAAGTGGGAGCAAATCGTTCTCGTGGTCAGTGTACTCGGCCAATATGTCGGATATCGATG ATTACGACTCGGATATGGAGAAGATATATGCTTTGTGA
AA sequence Show only first row Show all	>Lus10034579 pacid=23162850 polypeptide=Lus10034579 locus=Lus10034579.g ID=Lus10034579.BGIv1.0 annot-version=v1.0 MESKSLRFLAHQSFFSAVRSADLPTLKQIIDKLHKDHSSSSSSSGGSASSSSSSASPVTDLMALQNDAGETALYIAADNNLGEVFAYLIRLCDVEALKIR SKSGIDVFHLAAKKGHLGIVKEILGRWPELCKICDSSNTSPLYSAAVQDHLEVVNAILDVDLSTIRIVRKNGKTALHNAARYGLLRVAKLLMERDPGIVA IKDKKGQTALHMAVKGQCTSVVEELLQTDISVLNERDKKGNTAIHIATRKSRPQIVNVLVSYTSMDVNAINNQSETAMDLADKLPYGEAGLEIQEALREV GAKHAKFVGKADEAMELKRTVSDIKHEVHSQLIQNEKTNRRVSGIAKELRKLHREAVQNTTNSVTVVAVLFASIAFLAIFSLPGQYITGGPEVGKANVAD NIGFQVFCLLNATSLFISLAVVVVQITLVAWDTTAQKQVVSVVNKLMWAACACTCGAFLAVAFVVVGRGSSWMAITITLLGVPILVGTLAFMGYFVFRQH CGSFKDSQRRIKRASGSKSFSWSVYSANMSDIDDYDSDMEKIYAL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01680			Ankyrin repeat family protein ...		Lus10034579 [exp]	0	1
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Lus10033840 [exp]	1.4	0.9075
AT2G38185			RING/U-box superfamily protein...		Lus10004813 [exp]	2.0	0.8765
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Lus10019537 [exp]	2.4	0.8693
AT4G04860		DER2.2	DERLIN-2.2 (.1)		Lus10006771 [exp]	3.5	0.8670
AT2G17970			2-oxoglutarate (2OG) and Fe(II...		Lus10041917 [exp]	6.9	0.8532
AT1G56460			HIT zinc finger ;PAPA-1-like c...		Lus10031419 [exp]	7.5	0.8311
AT5G05200			Protein kinase superfamily pro...		Lus10030509 [exp]	10.2	0.8574
AT3G04470			Ankyrin repeat family protein ...		Lus10027960 [exp]	11.1	0.7965
AT5G41600		RTNLB4, BTI3	Reticulan like protein B4, VIR...		Lus10038833 [exp]	11.2	0.8337
AT3G17000		UBC32	ubiquitin-conjugating enzyme 3...		Lus10037759 [exp]	11.3	0.8466

Compare expression of checked genes

Lus10034579 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.