Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67950 148 / 1e-42 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT5G46870 147 / 2e-42 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G17720 140 / 3e-39 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G16840 120 / 2e-32 BPA1 binding partner of acd11 1 (.1.2.3) AT5G32450 117 / 3e-31 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT1G14340 105 / 1e-26 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G01210 94 / 1e-22 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G53650 47 / 9e-06 CID8 CTC-interacting domain 8 (.1.2) AT1G32790 44 / 9e-05 CID11 CTC-interacting domain 11 (.1.2) AT3G14450 43 / 0.0001 CID9 CTC-interacting domain 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021813 [exp] 397 / 4e-131 AT2G01690 1112 / 0.0 ARM repeat superfamily protein (.1.2) Lus10040095 [exp] 144 / 6e-41 AT4G17720 379 / 8e-133 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10030952 [exp] 141 / 9e-40 AT4G17720 382 / 7e-134 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10011063 [exp] 127 / 4e-34 AT4G17720 333 / 2e-114 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10025743 [exp] 120 / 5e-32 AT4G17720 295 / 4e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10030491 [exp] 117 / 2e-31 AT1G14340 300 / 1e-103 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10012843 [exp] 112 / 2e-29 AT1G14340 301 / 5e-104 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10000676 [exp] 110 / 5e-28 AT4G17720 313 / 1e-106 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10010660 [exp] 106 / 2e-26 AT5G32450 352 / 3e-122 RNA binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G103600 [exp] 190 / 2e-58 AT1G67950 280 / 6e-94 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Potri.001G138400 [exp] 151 / 6e-44 AT4G17720 365 / 2e-127 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.003G095400 [exp] 140 / 1e-39 AT4G17720 355 / 9e-124 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.017G081400 [exp] 120 / 4e-32 AT1G14340 229 / 3e-75 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.017G081500 [exp] 117 / 2e-31 AT1G14340 239 / 6e-80 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.019G037600 [exp] 116 / 2e-30 AT5G32450 400 / 2e-142 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.013G055100 [exp] 114 / 8e-30 AT5G32450 389 / 9e-138 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G070200 [exp] 52 / 1e-07 AT5G32450 65 / 8e-13 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G377500 [exp] 45 / 4e-05 AT3G14450 424 / 2e-150 CTC-interacting domain 9 (.1) Potri.011G095800 [exp] 44 / 9e-05 AT3G14450 391 / 3e-137 CTC-interacting domain 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10034580 pacid=23162796 polypeptide=Lus10034580 locus=Lus10034580.g ID=Lus10034580.BGIv1.0 annot-version=v1.0 ATGGAGGATCCTGCTACTTTTTGGACATCCAATTGGACTATAAATGTTTCAGATGTAAAAACAGTTCAGATCAGCAATCTTTCACCCTATGCTTCAGAGA GGAACATCCGAGACTTCTTCGCCTACACCGGCGAAATCATTATACACGTCGAGTTGCGAAGAGAGACTGACACAACTGGGTTAGCTTACGTTACCTTCAA GGAATCACAAGGAGCAGATACCGCCTTACTTCTTTCTGGATCCACCATTGGCCAAACCCCTGTTACAATCACCCCAGTCGAGGACTACATATTGCCCCCT GAAGGATCCCGTGTTTTGGATGAAATCATGAAACCAGCAGCATCAGCGAGAAGGAACAACAACAATAACAACTTTGCACTTACCGTGGCGGAAGAATTGG TGAGCACCATGATAGCCAAAGGCTACATGATGGGAAAAGACGCACTCCACAAGGCCAAAGAATTCGACGAAGATATCCTCCACCTGTCCTCCAACGTCAC CGCCATCGACGAGAGGGTGGGCCTCATCGAGAAGCTCAACCAAGGGATGGCCGCCGTCAGGAAGATGGAGCGGCAGTTCCAGGTGAAGGAGACCACCAGA TCCGCCATCCTCCTCGCCCAGACTGCCGGCTCCGCATTGCTCGACAGCGACAATGAGTACGTCGCAACCGGCGCTTCCTGGTTCGCCGGCGCGTTCGCCG CCATGGCTAAGGCGGCGACCAACGTGAAGGTGATGACCAGGGAGAAGCTAGAGAGGGCGGTGGAGGAGAAGCGAGCTGTGCTGTTACAGGAGAGGACGGG GACGGGAAGCATCTTCGTTAATAAGCTGGCGCACATGCATTTCGATCATCAGCTTCGTCGTCATCACCATACTTATATTTCTCAATCTGATCCAAGAAAG CTCACCTTCTATTGA
AA sequence Show only first row Show all	>Lus10034580 pacid=23162796 polypeptide=Lus10034580 locus=Lus10034580.g ID=Lus10034580.BGIv1.0 annot-version=v1.0 MEDPATFWTSNWTINVSDVKTVQISNLSPYASERNIRDFFAYTGEIIIHVELRRETDTTGLAYVTFKESQGADTALLLSGSTIGQTPVTITPVEDYILPP EGSRVLDEIMKPAASARRNNNNNNFALTVAEELVSTMIAKGYMMGKDALHKAKEFDEDILHLSSNVTAIDERVGLIEKLNQGMAAVRKMERQFQVKETTR SAILLAQTAGSALLDSDNEYVATGASWFAGAFAAMAKAATNVKVMTREKLERAVEEKRAVLLQERTGTGSIFVNKLAHMHFDHQLRRHHHTYISQSDPRK LTFY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67950			RNA-binding (RRM/RBD/RNP motif...		Lus10034580 [exp]	0	1
AT5G41850			alpha/beta-Hydrolases superfam...		Lus10032373 [exp]	2.2	0.9119
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10043161 [exp]	4.5	0.8931
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Lus10021035 [exp]	4.7	0.9029
AT5G12000			Protein kinase protein with ad...		Lus10006021 [exp]	6.0	0.8573
AT5G54060		UF3GT	UDP-glucose:flavonoid 3-o-gluc...		Lus10004381 [exp]	7.7	0.8944
AT5G25090		AtENODL13	early nodulin-like protein 13 ...		Lus10003432 [exp]	8.9	0.8300
AT3G25855			Copper transport protein famil...		Lus10021687 [exp]	10.7	0.8872
AT1G64090		RTNLB3	Reticulan like protein B3 (.1....		Lus10013099 [exp]	12.5	0.7479
					Lus10041616 [exp]	14.1	0.8737
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Lus10028116 [exp]	14.2	0.8178

Compare expression of checked genes

Lus10034580 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.