Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14750 228 / 6e-67 SDS SOLO DANCERS, Cyclin family protein (.1.2) AT4G35620 79 / 1e-15 CYCB2;2 Cyclin B2;2 (.1) AT2G17620 77 / 5e-15 CYCB2;1 Cyclin B2;1 (.1) AT1G20610 71 / 6e-13 CYCB2;3 Cyclin B2;3 (.1) AT1G76310 70 / 1e-12 CYCB2;4 CYCLIN B2;4 (.1) AT5G06150 63 / 2e-10 CYC1BAT, CYCB1;2 cyclin B 1;2, Cyclin family protein (.1) AT1G20590 61 / 2e-10 Cyclin family protein (.1) AT5G25380 60 / 2e-09 CYCA2;1 cyclin a2;1 (.1) AT3G11520 59 / 4e-09 CYC2, CYCB1;3 CYCLIN 2, CYCLIN B1;3 (.1) AT5G11300 59 / 6e-09 CYC2BAT, CYCA2;2, CYC3B CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021812 [exp] 927 / 0 AT1G14750 248 / 1e-74 SOLO DANCERS, Cyclin family protein (.1.2) Lus10041146 [exp] 94 / 8e-22 AT2G40410 125 / 7e-35 Staphylococcal nuclease homologue (.1.2) Lus10012261 [exp] 72 / 6e-13 AT1G76310 501 / 8e-176 CYCLIN B2;4 (.1) Lus10016015 [exp] 70 / 2e-12 AT1G76310 559 / 0.0 CYCLIN B2;4 (.1) Lus10030746 [exp] 66 / 5e-11 AT1G76310 526 / 0.0 CYCLIN B2;4 (.1) Lus10013226 [exp] 60 / 3e-09 AT1G76310 514 / 0.0 CYCLIN B2;4 (.1) Lus10008103 [exp] 52 / 7e-07 AT5G11300 465 / 6e-162 CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1) Lus10018715 [exp] 52 / 1e-06 AT1G47230 449 / 6e-158 CYCLIN A3;4 (.1.2) Lus10039033 [exp] 50 / 3e-06 AT5G06150 436 / 1e-150 cyclin B 1;2, Cyclin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G103800 [exp] 303 / 1e-95 AT1G14750 347 / 2e-112 SOLO DANCERS, Cyclin family protein (.1.2) Potri.005G100000 [exp] 74 / 7e-14 AT2G17620 459 / 1e-160 Cyclin B2;1 (.1) Potri.009G165800 [exp] 71 / 9e-13 AT1G76310 488 / 2e-172 CYCLIN B2;4 (.1) Potri.002G010000 [exp] 67 / 1e-11 AT1G76310 550 / 0.0 CYCLIN B2;4 (.1) Potri.005G251400 [exp] 63 / 3e-10 AT1G76310 539 / 0.0 CYCLIN B2;4 (.1) Potri.006G247200 [exp] 61 / 9e-10 AT5G11300 494 / 3e-173 CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1) Potri.018G034100 [exp] 61 / 2e-09 AT5G11300 498 / 1e-174 CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1) Potri.001G272000 [exp] 56 / 3e-08 AT2G26760 434 / 1e-151 Cyclin B1;4 (.1) Potri.010G173200 [exp] 56 / 7e-08 AT1G16330 477 / 1e-160 cyclin b3;1 (.1) Potri.009G066600 [exp] 54 / 1e-07 AT2G26760 430 / 5e-150 Cyclin B1;4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [flax] [poplar] Cyclin PF02984 [flax] [poplar] Cyclin_C Cyclin, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10034581 pacid=23162889 polypeptide=Lus10034581 locus=Lus10034581.g ID=Lus10034581.BGIv1.0 annot-version=v1.0 ATGATGCAGCTCAGATCGGGAAGAAAGCTCCTCCCTAAGGTGACACAACCTGTAGCAGATGCTGCTGAGCTTCCTCTCAAGCTCATCTCCAAGAAGAGGA AGAAGACTCGGACGCAGCTGCCTCGCCGACTTCGATCTCGCATCTCTCCGGTTCTCATCTCGTCGTCAAAGATAAGAGGTCTTACGACTACTACAGGTTC CGGCTCCTGCTCTTATCAGGTCGGAGATGAGGTCTCGTTTGCTGCTGTTGCTGCTGGAGATGGTGAGGATGACGGTGGAATCAATCAGAGCTCGAGAAAC AGGAAGCTCGGAGAGGACGGTGGAGAGGAGCAGAGGATTCAGCCTGCTCCTGTATCCAAGAAGATTGCTACGAGCTATCACATGATCAATGGGAGGGAAG GTGAGATGTCGATCGCCGGAAATGGAGTCACGGAGGTGAGCGAATCATCTTATGCTGCGTCGAATTATGTAGCTGAACTCGATCTATCTATCCGAAGGAC TAGGAAATTGAATAACGAGGAAGGTGAATCGAAGCCGTCCGCCGACTCGGACAGTTTAGTCGCAGTAAAAATTCCGGCGCAGGTGAAAGAGAAGGACGAA GAACGTGTGTCCGGTGCTAATTCTGAAGTTCACGGATCGTGCATGACGCATAAATCTAGTGGTGTTGGAGTCAGAGTATTGGTGTGCTCCGACGTGTCCA AACAGGAAGCTGATGCTATCTCTGTTGATGAGTCTGCGGTGGTGAATCAGAGGCCAAACAGCTTGGCAGGGCTCGAAGATGAACTTGTTTGCTTGGAGCA ATTCTCTTGTGAGGAAGTCGTATCTGATTACTCCTCCAGTAACGACACGGCGTACTCGGAGCTCCAGGGTGATGTGTTCCTCGATAGCTTCTCAGACCTC GATTTCTCGTCGGATTACACGCCGTCGATCTTCTTGGATTCTGGAAGCCAATTCTCTCAGAAGTCGGATAGCGATTCATCTCCTTCGCCTACTTATTCGT GTCTTCTCGAGTTTAGGCGTCAATTCTGCCGATCCAGTGCTCCTCTGCTCATCAGAACTTCCGCTGAAACAGAGTACCTAGACGAGTCCAGCTATGCCAG ATTCAAAGATGTAGACGATGAACAGAGTTACCAGATGTTAAGAGGAAGAGAGAGAAGACACATAGTTCTACAAGACTATGTCGAGTTCTACCGCTCGATG AAGGAGTACGGCGACCTTATATCCCAGCAACGTCGGCGGATGATCCATTGGATTATCGAGGAATCAACTGCAAAAGAGCTCCATCATGAGACAAAATTTT TGGGAGTGAACCTGCTTGACAGTGTGAGACAAAGGAATTTCCGCGTGGGGAATAATGCATACAGCAGATGCGAAGTAGTTGCCATGGAATGGCTAGTACA AGAGGTCCTCAACTTTGAATGCTTCTTACCCACCGTCTACAACTTCTTATGGTTCTACCTAAAAGCTGCTAGAGCAGACTCAGAGGTAGAGCAGAGGTCC TTGAACCTTGCATTGCTTGCCGTAGCAGACCATGAGCACCTTCAGTATTGGCCTTCAACTATTGCAGCATCACTTGTCATTCTGGCTTGTATGGATACCG GCCGTACTGCCTACTACAAGGGCGTATCTAAGCTTCATATCAGAACCAAAGAGAACGATCTTCATCCCTGTTTACAGATAGTTGATGGTTACGCAGGCCA TTGGGCTGCGCAATAA
AA sequence Show only first row Show all	>Lus10034581 pacid=23162889 polypeptide=Lus10034581 locus=Lus10034581.g ID=Lus10034581.BGIv1.0 annot-version=v1.0 MMQLRSGRKLLPKVTQPVADAAELPLKLISKKRKKTRTQLPRRLRSRISPVLISSSKIRGLTTTTGSGSCSYQVGDEVSFAAVAAGDGEDDGGINQSSRN RKLGEDGGEEQRIQPAPVSKKIATSYHMINGREGEMSIAGNGVTEVSESSYAASNYVAELDLSIRRTRKLNNEEGESKPSADSDSLVAVKIPAQVKEKDE ERVSGANSEVHGSCMTHKSSGVGVRVLVCSDVSKQEADAISVDESAVVNQRPNSLAGLEDELVCLEQFSCEEVVSDYSSSNDTAYSELQGDVFLDSFSDL DFSSDYTPSIFLDSGSQFSQKSDSDSSPSPTYSCLLEFRRQFCRSSAPLLIRTSAETEYLDESSYARFKDVDDEQSYQMLRGRERRHIVLQDYVEFYRSM KEYGDLISQQRRRMIHWIIEESTAKELHHETKFLGVNLLDSVRQRNFRVGNNAYSRCEVVAMEWLVQEVLNFECFLPTVYNFLWFYLKAARADSEVEQRS LNLALLAVADHEHLQYWPSTIAASLVILACMDTGRTAYYKGVSKLHIRTKENDLHPCLQIVDGYAGHWAAQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14750		SDS	SOLO DANCERS, Cyclin family pr...		Lus10034581 [exp]	0	1
AT3G19700		IKU2	HAIKU2, Leucine-rich repeat pr...		Lus10012461 [exp]	4.5	0.7543
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039426 [exp]	18.0	0.6708
AT4G01410			Late embryogenesis abundant (L...		Lus10012605 [exp]	19.5	0.6979
AT1G01320			Tetratricopeptide repeat (TPR)...		Lus10004009 [exp]	20.3	0.7484
AT5G48820		ICK6, KRP3	KIP-RELATED PROTEIN 3, inhibit...		Lus10022796 [exp]	27.4	0.6922
AT1G13630			Tetratricopeptide repeat (TPR)...		Lus10019200 [exp]	38.0	0.6014
AT1G50600	GRAS	SCL5	scarecrow-like 5 (.1)		Lus10003773 [exp]	39.0	0.6831
AT3G04590	AT-hook		AT hook motif DNA-binding fami...		Lus10006572 [exp]	41.6	0.6695
AT1G79440		ENF1, SSADH1, A...	SUCCINIC SEMIALDEHYDE DEHYDROG...		Lus10001845 [exp]	42.4	0.6225
					Lus10013898 [exp]	44.9	0.6663

Compare expression of checked genes

Lus10034581 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.