Plant FIBer expression Database

Lus10034582 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G80910 675 / 0 Protein of unknown function (DUF1712) (.1)
AT1G16020 651 / 0 Protein of unknown function (DUF1712) (.1), Protein of unknown function (DUF1712) (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021811
[exp]
995 / 0 AT1G80910 681 / 0.0 Protein of unknown function (DUF1712) (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G137000
[exp]
756 / 0 AT1G16020 720 / 0.0 Protein of unknown function (DUF1712) (.1), Protein of unknown function (DUF1712) (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence
>Lus10034582 pacid=23162800 polypeptide=Lus10034582 locus=Lus10034582.g ID=Lus10034582.BGIv1.0 annot-version=v1.0
ATGGGCTTGGCGTCCGTTAATACCGTCAGTGAAGGCATGCAACTCTGTATATTTGATTTGAGAAGAGGACAGCAGGAGGGGCAGGAGCTGGACAAGATTT
TGTTTTTCTTTCCCGCTGACTTGCCTTTCTCGTCCCAGCTTTCCGTCATAGGACTCAGTGAAGGGCTCATAACTTTTACAAGAATCTTCTCTCCAGATGC
GGCTTGTGAAGTGATAGAAGCAGAGAGGCACTCCCATGTCTTTTATGAAGCAGAACCAGACATTTGGATGGTGATGGTTGTGGAGAAAAGTAAGGAATCA
AAAACCTCTTGGCAGGTTGATGCATTACGGAAAGTTCTCAAAGAAGTTCACTCACTTTTCGTTTTCTTTCATGGAAAAATGAGATCAATGCTTGAGAGGG
AGACTAGTGGAGGTCTAATTCGCTCGCATTTATATCCTTTCATCACAGATTATCTTAGCGATTTTCTTGTTGGGAAGAAGCTCCAGTTACCATCATTTCA
TGATTGTTTGGTGGAGCGTGGAACTGTTCAAATGCTTACTGTTGGGAGGGAAGCAGCACTTGAAGTCCAGTCTCTGGTCAGAGTACTAGAATCTTCTGCT
GGAACCCCATCTTGCTACTCTCTGGTTTTGTTCCAGGACCTGATTGTCTCAACCACACTTTCTCCTGATGACACCATAAGTATGTTTACTTATGCAGTTC
TAAGGTTGACACCTCATGCTTTGTTATCTGGAGCAAGTTCGTGGTCTTATTTACAAACAAAAAATAGTGCAGGATCTCAGGTTCCTGTACTGTCTGCTAT
CAGCAACTCTGGGTCAGTTTCAGATAATATATATCGGCCACAGGATACATTAATGAACCAAGACCTTGTAAAAAGGCCATTACATCACAATAGGTGGTCT
AAAGGGAAGGATGGTTTTCTTACGTCTGATATTTGGGGAACTGGAGGTGATAATCGAACTTCTGCCACCCCAATAGTTTACCTCCAGCTGACTGAGGAAA
GCATGTATCTGTGTGCCTATCAATATAAAAGTCTGACCATAATCCTTCTGGTTCCTGTTTCCGCCATTCTAAATGGGGAGCAGGGTGTGTCACTGGTGAA
GCAGCAAATCTTGGAAAATGCCTCACTTAAAGTATTGAAGGTTGAGGAGAAACTGTCAAAGGGATGGGGTGGGGAAAATGCTTATCATGTTAGTGGCTAT
CGGTACTTACTGATTGATGATGAAAGAGGTGTATCCAGAGCTTCTCCTCCAGCAAAGGTCATGACCCTGACCAAGGAATCCTTACTCGCCATGAGCAAGG
TGAGAGAAGAGGTCAACTTGGAGAAGATGAGAGCACAATCCAACAGCAGTGTAAGCAGTGACAAAGAATTGGAAATATGTGTTAGAGCAAAAAATGGTGC
GTGGGTTATTGCACGAACATCAAGAGGGAAGGAGCTCTATATGGTTCTAGAGAAAGCCAGCGAAACACTTCTGTATGCATCTGAAGCTGTGGAGAAGTTC
AGCAACAGATACTGCGGTGGGGCATTCTCTTTAGATTGA
AA sequence
>Lus10034582 pacid=23162800 polypeptide=Lus10034582 locus=Lus10034582.g ID=Lus10034582.BGIv1.0 annot-version=v1.0
MGLASVNTVSEGMQLCIFDLRRGQQEGQELDKILFFFPADLPFSSQLSVIGLSEGLITFTRIFSPDAACEVIEAERHSHVFYEAEPDIWMVMVVEKSKES
KTSWQVDALRKVLKEVHSLFVFFHGKMRSMLERETSGGLIRSHLYPFITDYLSDFLVGKKLQLPSFHDCLVERGTVQMLTVGREAALEVQSLVRVLESSA
GTPSCYSLVLFQDLIVSTTLSPDDTISMFTYAVLRLTPHALLSGASSWSYLQTKNSAGSQVPVLSAISNSGSVSDNIYRPQDTLMNQDLVKRPLHHNRWS
KGKDGFLTSDIWGTGGDNRTSATPIVYLQLTEESMYLCAYQYKSLTIILLVPVSAILNGEQGVSLVKQQILENASLKVLKVEEKLSKGWGGENAYHVSGY
RYLLIDDERGVSRASPPAKVMTLTKESLLAMSKVREEVNLEKMRAQSNSSVSSDKELEICVRAKNGAWVIARTSRGKELYMVLEKASETLLYASEAVEKF
SNRYCGGAFSLD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G80910 Protein of unknown function (D... Lus10034582
[exp]
0 1
AT2G32760 unknown protein Lus10016662
[exp]
3.5 0.9211
AT3G10550 MTM1, AtMTM1 Arabidopsis thaliana myotubula... Lus10038641
[exp]
8.2 0.8785
AT4G30360 ATCNGC17 cyclic nucleotide-gated channe... Lus10019983
[exp]
8.5 0.9093
AT4G19110 Protein kinase superfamily pro... Lus10033278
[exp]
8.9 0.8743
AT5G08430 SWIB/MDM2 domain;Plus-3;GYF (.... Lus10020897
[exp]
9.4 0.9033
AT1G55680 Transducin/WD40 repeat-like su... Lus10035667
[exp]
13.6 0.9106
AT3G55960 Haloacid dehalogenase-like hyd... Lus10028284
[exp]
13.7 0.9019
AT5G16800 Acyl-CoA N-acyltransferases (N... Lus10013457
[exp]
13.9 0.9013
AT4G08480 MEKK2, MAPKKK9 MAPK/ERK KINASE KINASE 2, mito... Lus10029657
[exp]
14.3 0.9072
AT5G58220 ALNS, TTL allantoin synthase, transthyre... Lus10025696
[exp]
18.5 0.9040

Lus10034582 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.