Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67980 277 / 7e-95 CCOAMT caffeoyl-CoA 3-O-methyltransferase (.1.2) AT1G24735 272 / 1e-92 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G67990 267 / 6e-91 ATTSM1 TAPETUM-SPECIFIC METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G34050 222 / 1e-72 CCoAOMT1 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G26220 213 / 2e-69 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G61990 145 / 3e-42 OMTF3 O-MTase family 3 protein, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G62000 137 / 3e-39 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021804 [exp] 290 / 1e-100 AT1G24735 233 / 3e-78 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10014074 [exp] 221 / 2e-72 AT4G34050 465 / 1e-168 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10019841 [exp] 221 / 3e-72 AT4G34050 466 / 8e-169 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10027888 [exp] 217 / 8e-71 AT4G34050 461 / 9e-167 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10002837 [exp] 217 / 8e-71 AT4G34050 462 / 2e-167 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10009484 [exp] 186 / 1e-56 AT4G26220 255 / 1e-83 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10012913 [exp] 175 / 3e-54 AT4G26220 277 / 1e-94 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036339 [exp] 126 / 6e-35 AT3G62000 385 / 9e-136 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10010276 [exp] 84 / 3e-19 AT3G62000 269 / 1e-90 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G104400 [exp] 300 / 6e-104 AT1G67980 335 / 6e-118 caffeoyl-CoA 3-O-methyltransferase (.1.2) Potri.008G136600 [exp] 294 / 2e-101 AT1G67980 337 / 1e-118 caffeoyl-CoA 3-O-methyltransferase (.1.2) Potri.018G070300 [exp] 221 / 1e-72 AT4G26220 325 / 1e-113 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.009G099800 [exp] 217 / 6e-71 AT4G34050 465 / 2e-168 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.001G304800 [exp] 216 / 1e-70 AT4G34050 455 / 1e-164 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.002G183600 [exp] 127 / 3e-35 AT3G62000 404 / 3e-143 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01596 [flax] [poplar] Methyltransf_3 O-methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10034584 pacid=23162695 polypeptide=Lus10034584 locus=Lus10034584.g ID=Lus10034584.BGIv1.0 annot-version=v1.0 ATGGATTTGCCACACAAAGGAATCCTCCAGAGCCCTGACCTCGCCAAGTATATATACGAAACAAGCGTATACCCAAGAGAGCATGAGCAATTGAAGAAAA TACGGGAAGCTACCGTAGCCAAATACGGCAACATGGCGGAGACAGCGGTACCGGTGGATGAAGGGAGATTCTTGTCGTTGTTAGTGAAGCTTTTGAATCC AAAAAGAACGCTTGAGATTGGTGTTTTCACCGGCTACTCCCTCCTTTCCACCGCTTTAGCTCTCTCCGACGACTCTTTGATAACAGCGATTGATATCAGT AAAAATCACTACGACATTGGATTCCCTTACATCAAAGAGGCAGGGGTGGCCGACAAAATCAACTTCATAGAGTCTCCAGCCACTCCAGCCTTGGAACACT TGCTCGTAGCAATAAAAAATGAAGAAGAAGCATTGTACGACTTTGCATTCGTGGACGCGGACAAACCGAGCTACAAGGACTACCACGAGCATCTGGTGAA GCTCGTGAAGGTCGGAGGCTTGATCGCCTATGACAACACTCTGTGGTTCGGATTCGTTGCCAAGAATGAGAGTGAGGTCCCGGAGCGATTCAGGGGCGAT AGGAAGGCCATCATGGAGCTAAACAAGGCATTGGCTACCGATCCAAGGGTGGATGTTGCTCAGATTTCTGTGGGAGATGGGATCACTTTGTGCAGGCGGA TTCTGTAG
AA sequence Show only first row Show all	>Lus10034584 pacid=23162695 polypeptide=Lus10034584 locus=Lus10034584.g ID=Lus10034584.BGIv1.0 annot-version=v1.0 MDLPHKGILQSPDLAKYIYETSVYPREHEQLKKIREATVAKYGNMAETAVPVDEGRFLSLLVKLLNPKRTLEIGVFTGYSLLSTALALSDDSLITAIDIS KNHYDIGFPYIKEAGVADKINFIESPATPALEHLLVAIKNEEEALYDFAFVDADKPSYKDYHEHLVKLVKVGGLIAYDNTLWFGFVAKNESEVPERFRGD RKAIMELNKALATDPRVDVAQISVGDGITLCRRIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67980		CCOAMT	caffeoyl-CoA 3-O-methyltransfe...		Lus10034584 [exp]	0	1
AT1G30710			FAD-binding Berberine family p...		Lus10038676 [exp]	10.5	0.6468
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10023915 [exp]	11.0	0.7406
AT5G41410	HD	BEL1	BELL 1, POX (plant homeobox) f...		Lus10024661 [exp]	12.0	0.7609
AT4G36210			Protein of unknown function (D...		Lus10010626 [exp]	13.2	0.6953
					Lus10037930 [exp]	46.8	0.6732
AT3G51810		AT3, GEA1, ATEM...	GUANINE NUCLEOTIDE EXCHANGE FA...		Lus10005044 [exp]	49.2	0.6315
AT5G41410	HD	BEL1	BELL 1, POX (plant homeobox) f...		Lus10032292 [exp]	56.6	0.6746
AT2G36400	GRF	ATGRF3	growth-regulating factor 3 (.1...		Lus10028899 [exp]	58.1	0.6565
AT1G48120			hydrolases;protein serine/thre...		Lus10005957 [exp]	69.4	0.6314
AT5G55250		AtIAMT1, IAMT1	IAA carboxylmethyltransferase ...		Lus10032569 [exp]	79.5	0.6492

Compare expression of checked genes

Lus10034584 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.