Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68020 1429 / 0 ATTPS6 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) AT4G17770 1256 / 0 ATTPS5 TREHALOSE -6-PHOSPHATASE SYNTHASE S5, trehalose phosphatase/synthase 5 (.1) AT1G06410 1109 / 0 ATTPSA, ATTPS7 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) AT1G60140 1107 / 0 ATTPS10 TREHALOSE PHOSPHATE SYNTHASE 10, trehalose phosphate synthase (.1) AT1G23870 1107 / 0 ATTPS9 TREHALOSE -6-PHOSPHATASE SYNTHASE S9, trehalose-phosphatase/synthase 9 (.1) AT1G70290 1088 / 0 ATTPSC, ATTPS8 trehalose-6-phosphatase synthase S8 (.1) AT2G18700 1019 / 0 ATTPSB, ATTPS11 TREHALOSE-6-PHOSPHATE SYNTHASE 11, trehalose phosphatase/synthase 11 (.1) AT1G16980 451 / 6e-146 ATTPS2 TREHALOSE -6-PHOSPHATASE SYNTHASE S2, trehalose-phosphatase/synthase 2 (.1) AT1G78580 442 / 4e-141 ATTPS1 TREHALOSE-6-PHOSPHATE SYNTHASE 1, trehalose-6-phosphate synthase (.1) AT4G27550 424 / 8e-136 ATTPS4 ARABIDOPSIS THALIANA TREHALOSE PHOSPHATASE/SYNTHASE 4, trehalose-6-phosphatase synthase S4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021805 [exp] 1684 / 0 AT1G68020 1452 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Lus10030853 [exp] 1133 / 0 AT1G60140 1388 / 0.0 TREHALOSE PHOSPHATE SYNTHASE 10, trehalose phosphate synthase (.1) Lus10005425 [exp] 1126 / 0 AT1G06410 1338 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Lus10015231 [exp] 1124 / 0 AT1G06410 1337 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Lus10007311 [exp] 1120 / 0 AT1G06410 1347 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Lus10029258 [exp] 1116 / 0 AT1G06410 1338 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Lus10030635 [exp] 1114 / 0 AT1G60140 1367 / 0.0 TREHALOSE PHOSPHATE SYNTHASE 10, trehalose phosphate synthase (.1) Lus10012990 [exp] 1106 / 0 AT1G23870 1345 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S9, trehalose-phosphatase/synthase 9 (.1) Lus10029175 [exp] 1097 / 0 AT1G23870 1345 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S9, trehalose-phosphatase/synthase 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G104500 [exp] 1529 / 0 AT1G68020 1415 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Potri.008G136500 [exp] 1500 / 0 AT1G68020 1410 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Potri.003G094500 [exp] 1322 / 0 AT4G17770 1442 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S5, trehalose phosphatase/synthase 5 (.1) Potri.001G139500 [exp] 1293 / 0 AT4G17770 1429 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S5, trehalose phosphatase/synthase 5 (.1) Potri.004G061500 [exp] 1144 / 0 AT1G06410 1286 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Potri.011G070900 [exp] 1138 / 0 AT1G06410 1343 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Potri.015G074000 [exp] 1117 / 0 AT1G23870 1285 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S9, trehalose-phosphatase/synthase 9 (.1) Potri.012G078500 [exp] 1115 / 0 AT1G23870 1284 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S9, trehalose-phosphatase/synthase 9 (.1) Potri.006G175500 [exp] 1035 / 0 AT2G18700 1151 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 11, trehalose phosphatase/synthase 11 (.1) Potri.018G097700 [exp] 1024 / 0 AT2G18700 1118 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 11, trehalose phosphatase/synthase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF02358 [flax] [poplar] Trehalose_PPase Trehalose-phosphatase CL0113 [flax] [poplar] GT-B PF00982 [flax] [poplar] Glyco_transf_20 Glycosyltransferase family 20
Representative CDS sequence Show only first row Show all	>Lus10034585 pacid=23162803 polypeptide=Lus10034585 locus=Lus10034585.g ID=Lus10034585.BGIv1.0 annot-version=v1.0 ATGGTTTCAAGGTCTTACTCAAATCTACTAGAGCTAGTCTCTGGTGAGTCTCCTTCTTTTGGGAGGATGAGTAGAAGAATCCCTAGAATCATGACGGTGG CAGGTATCATTTCTGATCTGGATGATGATCCATCAGAGAGTGTATGTTCAGACCCTTCTTCCTCTACAGCACAGAAGGACAGGATAATCATAGTTGCTAA TCAGCTTCCCATTAGGGCTCAGAGGAAAACAGATGGAAGCAAGTCTTGGATGTTCACTTGGGATGAGAATTCACTTCTTCTTCAGCTGAAAGATGGGTTA GGGGATGATGATATTGAAGTTATCTATGTTGGCACTTTGAAAGAAGAAGTTCACCCGAGCGAGCAAGATGAGGTGTCTCAGATACTTTTGGAGACTTTCA AATGTGTGCCTGTTTTCCTTCCTAATGATCTGTTCACTAGGTACTACCATGGCTTCTGTAAGCAACAGTTGTGGCCTTTGTTTCATTACATGTTGCCTTT GTCTCCTGACCTTGGCGGTAGGTTCAACCGTTCATTATGGCAAGCATATGTGTCGGTGAATAAGATCTTCGCTGATAGGATTATGGAAGTGATCAACCCA GAAGAGGATTTCGTTTGGGTTCATGACTACCATTTGATGGTCTTGCCAACTTTCTTGAGGAAAAGGTTTAACAGGGTGAAACTTGGCTTCTTCCTTCATA GCCCGTTCCCTTCTTCTGAGATCTATAAGACATTGCCTATCCGAGAAGAACTTCTCCGAGCAATGTTGAATTCGGATTTGATCGGGTTTCATACCTTTGA TTACGCCAGGCATTTCTTGTCTTGCTGCAGTAGAATGCTTGGCCTAACTTACGAGTCGAAGAGAGGATATATCGGTCTCGAGTATTGTGGAAGAACTGTT AGCATCAAAATTCTTCCTGTCGGTATACATATGGGTCAACTTCAATCTGTTCTGAGCCTTTCCGAGACGGAGAGAAAGGTTAAGGAGCTCATTCATCAAT TCCGTGATAAGGGCAGGACAATGCTGCTAGGTGTGGATGATATGGATATATTCAAGGGTATAAGTTTGAAGTTGTTAGCTATGGAGCAATTACTTGTGCA GCATCCAGAGTGGCAAGGTAAGGTGGTGTTGGTTCAGATTGCGAATCCTGCTAGGGGAAGAGGCAAAGATGTGAAGGAAGTCCAGGCCGAGACGTACTCC ACAGTGAAGCGGATTAACGAAGCATTCGGGAGGCCCGGGTATGACCCCATTGTTCTGATTGATGCCCCTTTGAAGTTCTATGAGAAAGTGGCTTATTACG CCATTGCCGAATGTTGCTTGGTGACTGCTGTTAGAGACGGAATGAATCTCATACCTTATGAATATGTGATCAGCCGCCAAGGAAATGAACAATTGGACAA GGTCTTGGGAGTTGAACCATCTATGAAGAAGAGCATGTTGGTCATCTCGGAGTTCATAGGCTGCTCTCCATCGCTGAGCGGAGCCATTCGTGTAAACCCC TGGAACATTGATGCAGTGGCTGATGCAATGGATTTTGCTTTGGTCATGGCTGATTCAGAGAAACAACTCAGGCATGAGAAGCATTACAGGTATGTCAGCA CACATGACGTTGGCTACTGGGCTCGTAGCTTCCTTCAGGACTTGGAAAGGACATGCCGAGATCACAAGAGGAGGAGGTGTTGGGGCATTGGTTTTGGATT AAGCTTCAGAGTTGTGGCACTTGATCCCAACTTTAGGAAATTGTCCATGGAACACATTGTGTCTGCTTATAAGAGAACGACTACGAGAGCTATACTTCTT GACTATGATGGTACGCTGATGCCTCAGGGTTCGATCGACAAGAGTCCATCACCCAAGACCATCCAAATCCTAAACAGCTTATGCAGAGATACGAACAACA TCGTTTTCCTTGTCAGTGCGAGAAGCCGTTCAACACTTACTGAATGGTTTTCGCAGATTGAGAATTTGGGTTTAGCTGCAGAACATGGCTACTTTTTCAG GCTAATGCGAGATATGGAGTGGGAAATGTGTGTGGCTGCAGCTGATACCAGCTGGAAGCAGATTGCTGAGCCAGTGATGCAGCTTTATACGGAAACAACT GATGGGTCGACGATCGAGGATAGGGAAACTGCACTAGTCTGGTGCTATGAGGATGCGGACCCGGATTTCGGTTCATGCCAAGCTAAAGAACTTCTTGATC ATCTTGAGAGCGTCTTGGCCAATGAACCTGTCACCGTCAACAGTGGACAGAACATTGTGGAGGTTAAACCGCAGGGAGTGAGCAAGGGGATCGTGGCGAA ACGCCTACTCTCGACCATAGAAGACAAGCAGCTGACGCCAGACTTTGTTCTGTGCATTGGAGATGACCGATCTGACGAAGACATGTTCGAGGTGATCACG AGCTCCATGGCTGGGATGTCAACGTCGATGAACACGAGGTCAGAGGTGTTTGCTTGCACGGTTGGTAAGAAACCGAGCAAGGCAAAATACTACCTAGATG ATACAGCAGAGATTGTGAGGTTGATGCAGGGGTTGGCTTCGGTTTCGGAACAAGACCTTACCATCTAG
AA sequence Show only first row Show all	>Lus10034585 pacid=23162803 polypeptide=Lus10034585 locus=Lus10034585.g ID=Lus10034585.BGIv1.0 annot-version=v1.0 MVSRSYSNLLELVSGESPSFGRMSRRIPRIMTVAGIISDLDDDPSESVCSDPSSSTAQKDRIIIVANQLPIRAQRKTDGSKSWMFTWDENSLLLQLKDGL GDDDIEVIYVGTLKEEVHPSEQDEVSQILLETFKCVPVFLPNDLFTRYYHGFCKQQLWPLFHYMLPLSPDLGGRFNRSLWQAYVSVNKIFADRIMEVINP EEDFVWVHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYKTLPIREELLRAMLNSDLIGFHTFDYARHFLSCCSRMLGLTYESKRGYIGLEYCGRTV SIKILPVGIHMGQLQSVLSLSETERKVKELIHQFRDKGRTMLLGVDDMDIFKGISLKLLAMEQLLVQHPEWQGKVVLVQIANPARGRGKDVKEVQAETYS TVKRINEAFGRPGYDPIVLIDAPLKFYEKVAYYAIAECCLVTAVRDGMNLIPYEYVISRQGNEQLDKVLGVEPSMKKSMLVISEFIGCSPSLSGAIRVNP WNIDAVADAMDFALVMADSEKQLRHEKHYRYVSTHDVGYWARSFLQDLERTCRDHKRRRCWGIGFGLSFRVVALDPNFRKLSMEHIVSAYKRTTTRAILL DYDGTLMPQGSIDKSPSPKTIQILNSLCRDTNNIVFLVSARSRSTLTEWFSQIENLGLAAEHGYFFRLMRDMEWEMCVAAADTSWKQIAEPVMQLYTETT DGSTIEDRETALVWCYEDADPDFGSCQAKELLDHLESVLANEPVTVNSGQNIVEVKPQGVSKGIVAKRLLSTIEDKQLTPDFVLCIGDDRSDEDMFEVIT SSMAGMSTSMNTRSEVFACTVGKKPSKAKYYLDDTAEIVRLMQGLASVSEQDLTI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68020		ATTPS6	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10034585 [exp]	0	1
AT1G68020		ATTPS6	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10021805 [exp]	1.0	0.9431
AT5G10200			ARM-repeat/Tetratricopeptide r...		Lus10006301 [exp]	4.9	0.7873
AT5G26200			Mitochondrial substrate carrie...		Lus10025015 [exp]	5.0	0.7761
AT3G06660			PAPA-1-like family protein / z...		Lus10016899 [exp]	12.7	0.7859
AT4G15415		ATB'GAMMA, ATB'...	Protein phosphatase 2A regulat...		Lus10030002 [exp]	15.5	0.7616
AT5G56130		THO3, AtTEX1	Transducin/WD40 repeat-like su...		Lus10008356 [exp]	16.5	0.7730
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Lus10033185 [exp]	17.1	0.7840
AT5G58340	MYB		myb-like HTH transcriptional r...		Lus10017320 [exp]	17.7	0.7746
AT1G68550	AP2_ERF	CRF10	cytokinin response factor 10, ...		Lus10034316 [exp]	19.4	0.7749
AT2G27230	bHLH	LHW, bHLH156	LONESOME HIGHWAY, transcriptio...		Lus10013348 [exp]	21.4	0.7371

Compare expression of checked genes

Lus10034585 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.