Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14780 533 / 1e-179 MAC/Perforin domain-containing protein (.1) AT4G24290 410 / 3e-132 MAC/Perforin domain-containing protein (.1.2) AT1G28380 379 / 2e-120 NSL1 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) AT1G29690 346 / 2e-108 CAD1 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) AT2G01440 301 / 6e-88 DEAD/DEAH box RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021803 [exp] 812 / 0 AT1G28380 377 / 9e-125 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) Lus10041285 [exp] 414 / 2e-133 AT1G14780 507 / 2e-173 MAC/Perforin domain-containing protein (.1) Lus10037426 [exp] 410 / 4e-132 AT1G14780 514 / 2e-176 MAC/Perforin domain-containing protein (.1) Lus10035789 [exp] 375 / 1e-118 AT4G24290 911 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10025453 [exp] 370 / 9e-117 AT1G28380 745 / 0.0 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) Lus10029279 [exp] 360 / 1e-113 AT1G29690 868 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Lus10002768 [exp] 355 / 1e-111 AT1G29690 863 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Lus10012717 [exp] 354 / 5e-111 AT4G24290 764 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10010894 [exp] 349 / 4e-109 AT4G24290 761 / 0.0 MAC/Perforin domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G136401 [exp] 636 / 0 AT1G14780 691 / 0.0 MAC/Perforin domain-containing protein (.1) Potri.010G104600 [exp] 624 / 0 AT1G14780 697 / 0.0 MAC/Perforin domain-containing protein (.1) Potri.002G234700 [exp] 417 / 6e-135 AT1G14780 520 / 8e-179 MAC/Perforin domain-containing protein (.1) Potri.003G006500 [exp] 397 / 3e-127 AT4G24290 922 / 0.0 MAC/Perforin domain-containing protein (.1.2) Potri.011G057100 [exp] 385 / 6e-123 AT1G28380 790 / 0.0 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) Potri.004G047700 [exp] 382 / 1e-121 AT1G28380 809 / 0.0 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) Potri.019G001000 [exp] 381 / 2e-121 AT4G24290 780 / 0.0 MAC/Perforin domain-containing protein (.1.2) Potri.001G305600 [exp] 375 / 7e-119 AT4G24290 783 / 0.0 MAC/Perforin domain-containing protein (.1.2) Potri.004G064000 [exp] 357 / 1e-112 AT1G29690 901 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Potri.011G075500 [exp] 349 / 1e-109 AT1G29690 890 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [flax] [poplar] CDC PF01823 [flax] [poplar] MACPF MAC/Perforin domain
Representative CDS sequence Show only first row Show all	>Lus10034586 pacid=23162900 polypeptide=Lus10034586 locus=Lus10034586.g ID=Lus10034586.BGIv1.0 annot-version=v1.0 ATGGCGGGTGAGCCGCCGCTGAACGGAATCGCTAAAAGGGCTATCTCCGGATTGGGAAAAGGTTTCGACTTCACGTCCGATTTCAAGCTAAAATTCTGTA AAGGCAGAGACCGGCTCGTCCAGCTGAGCGACGCGACGCCGGAGCTTGCGATCCCCGGACACGGCGTCGTTTCGGGGGTGTCGGGGGACATAAGGTGCGA CAAGGGAGACCGGGTGAGGCACCAGTCGGACGTGCTGGAGTTCGGGCAGATGTCGGAGCTTTTCAACCTGAAGTCGTCGGTTTCCGGTAAAATTCCATCG GGTCATTTCAATTCGATGTTCGGGTTCGAGAGCGGGTCGTGGGGGCCCGACGCGAAGAACACCAAGTGTTTGGGGCTGGACGGGTACTATATTGTGCTGT TCAGTGTTCATATTGATCGGTACCCGCTTTTGCTCCGGGAAGAGGTCCGAAACGAGGTGCCGTCTTGTTGGGATCCCTCTGCTCTTGCCAGGTTTATAGA AAAGTATGGGACACATATAATAGTGGGAGTGAGCGTGGGAGGGAGCGACGTGGTGGTGGTGAGACAAGACAAGTCTTCCAAATTGGAACCTTCCCTCGTC AAGAAACACCTCGACGATCTTGCTGACCAGCTCTTCACCGGTTCATGTTCTTTCACCCCCAAATCGAACCGACTCTCCGCCACTGCCAAACCCAAGGTTC ATCCGGCTTTCAACGTCTTCGATCCACAACCCCTATCTTTCGACACCTTCTCCGTCATTAACGAAAAAGATGGAATTAGTGTGATATGCAACAGAAGAGG AGGGGATCCGAGCGTAAGCAGCCACTGCGAATGGCTACCGACAGTAGCATTGATGCCGGATGCCATTCATTTCGACTTCATCCCCATCACTTCTCTCCTC AAGGGTGTTCCTGGCAAAGGCTTCCTCTCCCATGCCATCAATCTTTACCTCAGATACAAGCCTCCCTTGTCAGATCTGCAATACTTTCTGGACTTCCAAT CCCATAAGATGTGGGCTCCAATCCACAATGACCTCCCACTGGGCCCAGTTAGAAAAATCACCAATGCTTCCCCATCCCTTCAGCTCACTGTCATGGGCCC TAAACTCTACGTCAATACAACTCAGGTTGTAGTTGGAAGTAAGCCTGTTACTGGGATGCGATTCTTTCTCGAAGGCATGAAAAATAACAGGTTAGCAATA CATCTCCAACACCTTTCCAACACGCCAACAATGCTTTCCAACAGCTTAAACGACGCCGTTCCCTCCACTTCATTCTGGCGTAGCTCCGATGAGACGCCCA ACCACGAAGCCTATCTAGAACCCATCTCCGGCAAGAAATTCTCCCACGTCTGCACTTCTCCCATCGCCCACGACGACCCTTCTCACAACTTGACCGCCGC TGCCGCCACATCCGACCAAAATTGCACCGGAGCATCATCCTACATCGTCACCGGAACCCAACTCCACGTCACCAAAAACGGCGGCCGTCCAGTCCTCCAC CTACGCCTTCAGTTCACAAAAGTCGACGGCTGCTTCATCGTGCAGTCCACGTGGGCCTCCACATCCGCGTCCTCGTCGTCTTCGTCAGAGCTGGTGATGG CGTCGCCGCCCAGCTCCCCCCCCGGCTCTCTCGTGCAGGCACTGATGGACTATGACGGTTTCCGTGATTTCATTGGGGAACAAAAAGCTAATAAGATATT TGGCGGTGATCTCAGAAATGCTGCGGGTGATTTTGACATGTCATTCGCGTGTAAAAAGTTCCCTTCTGTACGTATTGGTAGTTCTGCTCCTATTGAATTG TATGAAGAGATCACAGATGGCTCAGTAATGGAGAGCCTGTTAGCTTCGACAAATGATAAGGGGTTTATTGCAACTGGTACGAGTATGAAATGGCTTGATT CAGACGAGCTTTGTGAACATTTGTCCCCTGTGCAAAATCTTCCTGCTGTGAATCCTAGAGATTCAGAAGAATCAAGAGATGCCAGCATTGCAAGTGAAAC AAGTGAACAATTGGAAGGGGAAGAATTGAATCACTTGCCGCTATTTACGGAGGAAAAGAATTTGGAAAATGAAGCAATAAGTGATGTAGTTACTGTTGGT GATCCATCTGCCACAAAAAGTCCTCAAGTTCTACCGAATGCTGCAACTCTTGATGCACCTCTGAATTGTGTGCCTGGCTTAACTGCTAGGCAATGTAACC AGTTAGAAAACTATGGTTTTCACACGCTTCGAAAATTGCTTCACCATTTTCCTCGTACATATGCTGATTTACGGAATGCTCAAGTTGGGGTAGATGATGG TCAATACCTAATATCTGTTGGAAAAGTCTTATCTTCCAGGGGAGTTAGAGCAAATTGTTCGTTTTCATTCCTGGAGGTGATTGTTGGCTGTGAGATTACA GATGGATCTGCACAAGTGTTTGGTGATGCTCATGGTCTCGAAAAGAAGACCATTTATTTGCACCTTAAAAAATTCTTCCGTGGCACTCGTTTCACTTTTC AACCTTTTCTCAGACGGCTTGAGGAAAATCACAAAGTGGGAGAACTTGTTTGTGTTAGTGGAAAGGTTAGGAAAATGCCAGCTAATGATCACTACGAAAT GAGGGAATACAGCATTGATACGTTGAAAGATGATGAAGGTTCGTCTGCCCGTGCTGAAGAGAGGCTATATCCTATCTATCCTTCAAAAGGACGCTTGAAT CCCGAGTTTCTTAGAGATATTATATGGAGGTATGTTTTATTTCCTTTGCATTTTTAA
AA sequence Show only first row Show all	>Lus10034586 pacid=23162900 polypeptide=Lus10034586 locus=Lus10034586.g ID=Lus10034586.BGIv1.0 annot-version=v1.0 MAGEPPLNGIAKRAISGLGKGFDFTSDFKLKFCKGRDRLVQLSDATPELAIPGHGVVSGVSGDIRCDKGDRVRHQSDVLEFGQMSELFNLKSSVSGKIPS GHFNSMFGFESGSWGPDAKNTKCLGLDGYYIVLFSVHIDRYPLLLREEVRNEVPSCWDPSALARFIEKYGTHIIVGVSVGGSDVVVVRQDKSSKLEPSLV KKHLDDLADQLFTGSCSFTPKSNRLSATAKPKVHPAFNVFDPQPLSFDTFSVINEKDGISVICNRRGGDPSVSSHCEWLPTVALMPDAIHFDFIPITSLL KGVPGKGFLSHAINLYLRYKPPLSDLQYFLDFQSHKMWAPIHNDLPLGPVRKITNASPSLQLTVMGPKLYVNTTQVVVGSKPVTGMRFFLEGMKNNRLAI HLQHLSNTPTMLSNSLNDAVPSTSFWRSSDETPNHEAYLEPISGKKFSHVCTSPIAHDDPSHNLTAAAATSDQNCTGASSYIVTGTQLHVTKNGGRPVLH LRLQFTKVDGCFIVQSTWASTSASSSSSSELVMASPPSSPPGSLVQALMDYDGFRDFIGEQKANKIFGGDLRNAAGDFDMSFACKKFPSVRIGSSAPIEL YEEITDGSVMESLLASTNDKGFIATGTSMKWLDSDELCEHLSPVQNLPAVNPRDSEESRDASIASETSEQLEGEELNHLPLFTEEKNLENEAISDVVTVG DPSATKSPQVLPNAATLDAPLNCVPGLTARQCNQLENYGFHTLRKLLHHFPRTYADLRNAQVGVDDGQYLISVGKVLSSRGVRANCSFSFLEVIVGCEIT DGSAQVFGDAHGLEKKTIYLHLKKFFRGTRFTFQPFLRRLEENHKVGELVCVSGKVRKMPANDHYEMREYSIDTLKDDEGSSARAEERLYPIYPSKGRLN PEFLRDIIWRYVLFPLHF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14780			MAC/Perforin domain-containing...		Lus10034586 [exp]	0	1
AT1G07910		ATRNL, RNL, AtR...	ARABIDOPSIS THALIANA RNA LIGAS...		Lus10017071 [exp]	1.7	0.8340
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Lus10043135 [exp]	5.2	0.8000
AT5G25480		AtDNMT2, DNMT2	DNA METHYLTRANSFERASE 2, DNA m...		Lus10020155 [exp]	5.3	0.7713
AT5G58410			HEAT/U-box domain-containing p...		Lus10042236 [exp]	5.5	0.8185
AT3G18290		BTS, EMB2454	embryo defective 2454, BRUTUS,...		Lus10005111 [exp]	8.1	0.7624
AT1G32750		GTD1, TAF1, HAF...	TBP-ASSOCIATED FACTOR 1, HISTO...		Lus10008553 [exp]	18.5	0.7148
AT5G52410			unknown protein		Lus10038854 [exp]	20.0	0.7479
AT1G61140		EDA16	embryo sac development arrest ...		Lus10011211 [exp]	20.3	0.7401
AT1G17500			ATPase E1-E2 type family prote...		Lus10037622 [exp]	26.9	0.7056
AT3G19780			unknown protein		Lus10040970 [exp]	27.9	0.7243

Compare expression of checked genes

Lus10034586 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.