Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68070 346 / 1e-115 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT2G01735 319 / 5e-105 RIE1 RING-finger protein for embryogenesis (.1) AT3G61180 224 / 9e-68 RING/U-box superfamily protein (.1) AT4G11680 222 / 5e-67 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT1G63170 186 / 1e-53 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT1G12760 171 / 3e-48 Zinc finger, C3HC4 type (RING finger) family protein (.1), Zinc finger, C3HC4 type (RING finger) family protein (.2) AT1G80400 85 / 2e-17 RING/U-box superfamily protein (.1) AT4G32600 84 / 3e-17 RING/U-box superfamily protein (.1) AT5G55970 69 / 2e-12 RING/U-box superfamily protein (.1.2) AT5G42940 66 / 3e-11 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021801 [exp] 506 / 2e-177 AT1G68070 478 / 1e-169 Zinc finger, C3HC4 type (RING finger) family protein (.1) Lus10041359 [exp] 194 / 2e-56 AT3G61180 400 / 6e-139 RING/U-box superfamily protein (.1) Lus10036569 [exp] 184 / 1e-52 AT3G61180 387 / 1e-133 RING/U-box superfamily protein (.1) Lus10006313 [exp] 170 / 1e-47 AT4G11680 456 / 8e-161 Zinc finger, C3HC4 type (RING finger) family protein (.1) Lus10029582 [exp] 148 / 4e-40 AT3G61180 315 / 3e-106 RING/U-box superfamily protein (.1) Lus10011475 [exp] 87 / 3e-18 AT1G80400 459 / 9e-161 RING/U-box superfamily protein (.1) Lus10023112 [exp] 86 / 1e-17 AT1G80400 447 / 1e-155 RING/U-box superfamily protein (.1) Lus10008106 [exp] 82 / 1e-16 AT4G32600 410 / 1e-141 RING/U-box superfamily protein (.1) Lus10013144 [exp] 81 / 3e-16 AT4G32600 477 / 2e-167 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G134900 [exp] 380 / 5e-129 AT1G68070 392 / 2e-136 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.010G106300 [exp] 354 / 1e-118 AT1G68070 412 / 2e-144 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.003G123300 [exp] 213 / 2e-63 AT1G12760 400 / 7e-138 Zinc finger, C3HC4 type (RING finger) family protein (.1), Zinc finger, C3HC4 type (RING finger) family protein (.2) Potri.002G155200 [exp] 191 / 2e-55 AT3G61180 366 / 3e-125 RING/U-box superfamily protein (.1) Potri.014G075000 [exp] 148 / 1e-39 AT3G61180 315 / 1e-105 RING/U-box superfamily protein (.1) Potri.006G247000 [exp] 84 / 5e-17 AT4G32600 498 / 1e-175 RING/U-box superfamily protein (.1) Potri.018G034400 [exp] 82 / 2e-16 AT4G32600 464 / 7e-162 RING/U-box superfamily protein (.1) Potri.001G371200 [exp] 74 / 5e-14 AT5G55970 424 / 3e-149 RING/U-box superfamily protein (.1.2) Potri.011G094800 [exp] 71 / 5e-13 AT5G55970 412 / 1e-144 RING/U-box superfamily protein (.1.2) Potri.004G122000 [exp] 66 / 1e-12 AT1G26800 94 / 1e-24 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10034587 pacid=23162853 polypeptide=Lus10034587 locus=Lus10034587.g ID=Lus10034587.BGIv1.0 annot-version=v1.0 ATGTCATCAACCAACTCCGCTCCTCATCCAATCGACGCCTCCGCCGGTGACCCCCACGCCCCTCTTCTCCACTCCCGTCACCATGATCTTCCCAATCCTT CCTCATCCTCCTCATCATCCTCTTCCATTTCTCCTCCGTCGACTCCCACCACCGGCCGCGCCACTTCACTCGCAGTCCTCCTCGGCCGGGCCTCCGGGAG GCGAGGCCCTTCCCTCTTAGTCAGGGAATCCGCTGCGCGTGAGCTCGAGGAACGACGCGTCGACTGGGGATACTCCAAGCCTGTGGTCGCCGTCGATATG GTGTGGAACATTGCTTTCGTCCTTGTGTCCCTGACGATGTTGATCGTGACGTCCAGGGAGAGGCCGAACACGCCGATTAGGGTTTGGATCTGCGGCTACG CTCTTCAGTGCTTGATACACGTGGTGCTGGTGTGGATGGAGTTCAGGAGGAGGAACCGGTCGAGGGACGGTGATCAGAGGCGACGTCGGGATGAGGAGGA AGTGGAAAGAGGAAGGATTTCTGATGAAGATGACGATGGGAGTGATCGGAGCTCCTTCAACGCTGGTTTTGCCAAGCGATGCGAGTCGATGAATACAATG GCATCGTTCGTCTGGTGGATAGTTGGCTTCTATTGGGTTGTCTCTGGGGGGGATCTCCTGTTGCAGAGTGCTCCACGCTTGTACTGGCTGGCTGTGGTTT TTCTAGCATTTGATGTGTTCTTTGCCATATTCTGCGTTGTTTTGGCATGTCTGATTGGCATTGCGCTTTGCTGTTGCTTGCCTTGCATCATAGCCATTCT ATATGCTGTTGCTGGACAGGAAGGTGCATCGGATGCCGACCTCAGTGTCCTCACAAAATATAGATTCCAGGCTTCTAGCAACGGTGATAAACCCAGTATT GAGGCAGGGAAAATGGTTCCAGCTGAGACTAGCAGTTTATACTTAGCACAAGAACGTACTCTACTGCCGGAAGATGCTGAATGCTGCATATGTCTGACCT CTTACGAGGATGGAGCAGAGCTGAATGCCCTGCCATGCAATCACCACTTCCATTCGAGCTGCATTGTGAGATGGCTGAAGATGAATGCAACTTGTCCTCT CTGCAAGTACAACATTCTCAAAGGAAACGAGCAGCAGATGGACTTGCCTGAACCGGCGGATATGGACATCCAACACCACTATGGCGGCCACGACCACTCT TCCGCCGACCAGTACCTCCACCAACATCAGGGGGTAATAGCGATTAAAAAACTGTTGTTAACGGTTGTCCTACCTGCTCTGCAATCTCTTAAAGGAGAGT CTCAGAACTCTATCGCTCGCCACCATCATACAAACTCTCCGATCCAGCCAACCACCGCAATCCCTCGTCAAACACAACCTGCACAACGGCCGCTACCTCG GACCTCCAACCGCAACATCATGCCTCAAGCCACCGTCTCGACCATAACCTCCATCATCGCGGCACCCCCTGCCAACACAAACCTCAATCTGCCACCCACA CTAGTCGTCACACCCGTTCCTGGAGGCCCCCCCGCAACCGCGTCCCGCAACAATGGCCACATCCCTACCGCCGACGAGCACCCCAACCAGCCCGGCGGCC ATGATTATGGAGCTAGCAGCTCTCTTGCTAGCAGACCTGATCGAAGAGCCTAA
AA sequence Show only first row Show all	>Lus10034587 pacid=23162853 polypeptide=Lus10034587 locus=Lus10034587.g ID=Lus10034587.BGIv1.0 annot-version=v1.0 MSSTNSAPHPIDASAGDPHAPLLHSRHHDLPNPSSSSSSSSSISPPSTPTTGRATSLAVLLGRASGRRGPSLLVRESAARELEERRVDWGYSKPVVAVDM VWNIAFVLVSLTMLIVTSRERPNTPIRVWICGYALQCLIHVVLVWMEFRRRNRSRDGDQRRRRDEEEVERGRISDEDDDGSDRSSFNAGFAKRCESMNTM ASFVWWIVGFYWVVSGGDLLLQSAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASDADLSVLTKYRFQASSNGDKPSI EAGKMVPAETSSLYLAQERTLLPEDAECCICLTSYEDGAELNALPCNHHFHSSCIVRWLKMNATCPLCKYNILKGNEQQMDLPEPADMDIQHHYGGHDHS SADQYLHQHQGVIAIKKLLLTVVLPALQSLKGESQNSIARHHHTNSPIQPTTAIPRQTQPAQRPLPRTSNRNIMPQATVSTITSIIAAPPANTNLNLPPT LVVTPVPGGPPATASRNNGHIPTADEHPNQPGGHDYGASSSLASRPDRRA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68070			Zinc finger, C3HC4 type (RING ...		Lus10034587 [exp]	0	1
AT1G65910	NAC	ANAC028	NAC domain containing protein ...		Lus10010037 [exp]	1.4	0.8010
AT1G68070			Zinc finger, C3HC4 type (RING ...		Lus10021801 [exp]	1.7	0.8452
AT3G52190		AtPHF1, PHF1	phosphate transporter traffic ...		Lus10017451 [exp]	7.7	0.7791
AT1G43700	bZIP	SUE3, AtbZIP51,...	sulphate utilization efficienc...		Lus10029773 [exp]	10.0	0.7471
AT4G08455			BTB/POZ domain-containing prot...		Lus10042763 [exp]	11.2	0.7510
AT5G67220			FMN-linked oxidoreductases sup...		Lus10041598 [exp]	14.5	0.7088
AT5G02420			unknown protein		Lus10038653 [exp]	17.2	0.7204
AT3G06780			glycine-rich protein (.1)		Lus10016828 [exp]	18.0	0.7829
AT5G64920		CIP8	COP1-interacting protein 8 (.1...		Lus10031422 [exp]	20.0	0.7564
AT1G64140			unknown protein		Lus10032329 [exp]	20.3	0.7594

Compare expression of checked genes

Lus10034587 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.