Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01440 750 / 0 DEAD/DEAH box RNA helicase family protein (.1) AT3G02060 211 / 8e-60 DEAD/DEAH box helicase, putative (.1.2) AT3G22330 52 / 5e-07 ATRH53, PMH2 putative mitochondrial RNA helicase 2 (.1) AT3G22310 50 / 3e-06 ATRH9, PMH1 RNA HELICASE 9, putative mitochondrial RNA helicase 1 (.1) AT1G72730 45 / 0.0001 DEA(D/H)-box RNA helicase family protein (.1) AT3G61240 45 / 0.0001 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) AT3G13920 44 / 0.0002 RH4, TIF4A1, EIF4A1 eukaryotic translation initiation factor 4A1 (.1.2.3.4) AT5G26742 44 / 0.0002 EMB1138 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) AT2G45810 44 / 0.0003 DEA(D/H)-box RNA helicase family protein (.1) AT1G54270 44 / 0.0003 EIF4A-2 eif4a-2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041506 [exp] 199 / 2e-55 AT3G02060 1230 / 0.0 DEAD/DEAH box helicase, putative (.1.2) Lus10012587 [exp] 198 / 5e-55 AT3G02060 1231 / 0.0 DEAD/DEAH box helicase, putative (.1.2) Lus10035410 [exp] 49 / 8e-06 AT3G22330 692 / 0.0 putative mitochondrial RNA helicase 2 (.1) Lus10031012 [exp] 48 / 2e-05 AT3G22330 690 / 0.0 putative mitochondrial RNA helicase 2 (.1) Lus10001074 [exp] 46 / 4e-05 AT3G58570 533 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10027268 [exp] 47 / 5e-05 AT3G22330 632 / 0.0 putative mitochondrial RNA helicase 2 (.1) Lus10038975 [exp] 47 / 5e-05 AT3G22330 639 / 0.0 putative mitochondrial RNA helicase 2 (.1) Lus10030075 [exp] 45 / 9e-05 AT3G58570 603 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10001425 [exp] 44 / 0.0002 AT5G26742 859 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G112500 [exp] 805 / 0 AT2G01440 1177 / 0.0 DEAD/DEAH box RNA helicase family protein (.1) Potri.014G145000 [exp] 203 / 6e-57 AT3G02060 1254 / 0.0 DEAD/DEAH box helicase, putative (.1.2) Potri.002G237400 [exp] 194 / 1e-53 AT3G02060 1270 / 0.0 DEAD/DEAH box helicase, putative (.1.2) Potri.016G023100 [exp] 51 / 2e-06 AT3G22330 648 / 0.0 putative mitochondrial RNA helicase 2 (.1) Potri.006G024100 [exp] 50 / 3e-06 AT3G22330 654 / 0.0 putative mitochondrial RNA helicase 2 (.1) Potri.003G217800 [exp] 46 / 6e-05 AT2G42520 812 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G007900 [exp] 46 / 7e-05 AT2G42520 807 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G070000 [exp] 45 / 8e-05 AT3G19760 689 / 0.0 eukaryotic initiation factor 4A-III (.1) Potri.006G196000 [exp] 45 / 8e-05 AT3G58570 790 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G093900 [exp] 45 / 8e-05 AT3G19760 693 / 0.0 eukaryotic initiation factor 4A-III (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10034589 pacid=23162710 polypeptide=Lus10034589 locus=Lus10034589.g ID=Lus10034589.BGIv1.0 annot-version=v1.0 ATGGCTGCACTTAAGCTGGGTCGCTTATTCCAAATGCTTGAAGGTCTTGGCTCGCGTATTGAAAAGGATGGACTGCTGGACAAGCATATAAACCCTAAAT TTGATGTTGTTCCTGTTGAGCAGTGGTCCAACCTTGCAAAGGAATTTTCGAAAATTGTTCCTTATGCACTTACCCCAAGTCAACTAACTGCTGTTTCAGA AATTATTTGGGATCTAAGTAAGCCAGTTCCTATGAATCGACTCTTGCAGGGGGATGTCGGATGCGGGAAAACAATTGTTGCTTTCTTAGCATGTATGGAG GTTATTGGCCATGGCTATCAGGCTGCTTTCATGGTTCCGACTGAATTACTGGCTATTCAACATTATGAGCATCTCCTCCACTTGTTAGAGTTCATGGAGG AAAAGTCCAGACCTTCTGTTGCTTTACTATGTGGCTCAACTCCAATGAAGCAGTCTCGGATCATCCGGCAGGACCTTCAAACTGGAGCTATATCCATGGT TATTGGAACTCACACTTTAATATCTGAAAACATAGACTTCTCCTCTTTGCGCATCACTGTGGTTGATGAACAACATCGCTTCGGTGTGATACAGAGAGGA AGGTTTAACAGTAAGTTATACACTGGCTCTTCAATTTCAAGAATACAAGAGGCCAATTCTGAGGAGGGAAGCTCAGGAGGTGATGTGTCTATGGCACCAC ATGTTCTTGCATTATCAGCTACTCCCATCCCCAGGACGCTTGCACTGGCCCTGTACGGAGATATGTCCCTTACTCAAATAACTGACCTGCCTCCCGGTAG ACTTCCAGTTGAAACTTGTGTCGTTGAAGGAAACGACAGTGGGTTTGAAGAGGTCTACAAGATGATGCTGGACGAACTTAAATCAGAAGGTAGAGTGTAC CTCGTATATCCAATCATACAACAGTCCGAGCAACTGCCGCAGCTCAAGGCAGCTTCAGCCGACCTCGAAAACATATCCCAGAAGTTCCCAGACTACAGCT GCGGATTGCTGCACGGCAAAATGAAGAGCGACGAGAAGGAACAAGCACTGAGGAGATTCCGATGCGGAGAAACACAAATACTGCTCTCGACGCAAGTAAT CGAAGTCGGTGTTGACGTCCCAGATGCATCGATGATGGTCGTCATGAACGCCGAGAGATTCGGGATAGCGCAACTGCACCAACTGAGGGGACGAGTCGGG AGGGGAACACGCAAGTCGAAATGTGTGCTGGTAGGGTCCACGAGCAGTAGCCTTGAGCGCTTAAAGGTCCTGGAAAAGTCCTCGGACGGGTTTCACTTGG CAAATGTGGATCTTCTCATACGCGGACCGGGTGACTTGCTCGGCAAGAAACAGTCTGGACACCTCCCGGAGTTCCCCATCGCTAGGCTGGAGAAAGATGG CAACATTTTGCAAGATGCCCACAGCGCTGCACTGAGGATTCTACGTGAATCTCATGACCTGGAGAAATTCCCTGGTCTCAAAGCAGAGCTCAGCATGCGA CAACCACTGTGCCTTCTTGGTGATTGA
AA sequence Show only first row Show all	>Lus10034589 pacid=23162710 polypeptide=Lus10034589 locus=Lus10034589.g ID=Lus10034589.BGIv1.0 annot-version=v1.0 MAALKLGRLFQMLEGLGSRIEKDGLLDKHINPKFDVVPVEQWSNLAKEFSKIVPYALTPSQLTAVSEIIWDLSKPVPMNRLLQGDVGCGKTIVAFLACME VIGHGYQAAFMVPTELLAIQHYEHLLHLLEFMEEKSRPSVALLCGSTPMKQSRIIRQDLQTGAISMVIGTHTLISENIDFSSLRITVVDEQHRFGVIQRG RFNSKLYTGSSISRIQEANSEEGSSGGDVSMAPHVLALSATPIPRTLALALYGDMSLTQITDLPPGRLPVETCVVEGNDSGFEEVYKMMLDELKSEGRVY LVYPIIQQSEQLPQLKAASADLENISQKFPDYSCGLLHGKMKSDEKEQALRRFRCGETQILLSTQVIEVGVDVPDASMMVVMNAERFGIAQLHQLRGRVG RGTRKSKCVLVGSTSSSLERLKVLEKSSDGFHLANVDLLIRGPGDLLGKKQSGHLPEFPIARLEKDGNILQDAHSAALRILRESHDLEKFPGLKAELSMR QPLCLLGD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01440			DEAD/DEAH box RNA helicase fam...		Lus10034589 [exp]	0	1
AT1G71260		WHY2, ATWHY2	WHIRLY 2 (.1)		Lus10035067 [exp]	3.2	0.8523
AT2G04530		CPZ, TRZ2	TRNASE Z 2, Metallo-hydrolase/...		Lus10033809 [exp]	4.5	0.8783
AT5G50110			S-adenosyl-L-methionine-depend...		Lus10043465 [exp]	4.6	0.8738
AT4G26370			antitermination NusB domain-co...		Lus10010325 [exp]	8.9	0.8839
AT4G35130			Tetratricopeptide repeat (TPR)...		Lus10035619 [exp]	9.5	0.8414
AT4G03200			catalytics (.1.2)		Lus10002341 [exp]	10.2	0.8474
AT5G51820		STF1, PGM1, ATP...	STARCH-FREE 1, ARABIDOPSIS THA...		Lus10031669 [exp]	14.5	0.8301
AT5G52440		HCF106	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10039254 [exp]	21.4	0.8400
AT3G01370		ATCFM2	Arabidopsis thaliana CRM famil...		Lus10039467 [exp]	22.6	0.8624
AT2G29260			NAD(P)-binding Rossmann-fold s...		Lus10040730 [exp]	23.1	0.7905

Compare expression of checked genes

Lus10034589 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.