Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24500 201 / 1e-67 MBF1C, ATMBF1C multiprotein bridging factor 1C (.1.2) AT3G58680 146 / 5e-46 MBF1B, ATMBF1B multiprotein bridging factor 1B (.1) AT2G42680 140 / 2e-43 MBF1A, ATMBF1A ARABIDOPSIS THALIANA MULTIPROTEIN BRIDGING FACTOR 1A, multiprotein bridging factor 1A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021776 [exp] 278 / 9e-98 AT3G24500 202 / 8e-68 multiprotein bridging factor 1C (.1.2) Lus10013686 [exp] 154 / 9e-49 AT3G58680 224 / 5e-77 multiprotein bridging factor 1B (.1) Lus10017945 [exp] 154 / 9e-49 AT3G58680 224 / 5e-77 multiprotein bridging factor 1B (.1) Lus10016756 [exp] 101 / 9e-29 AT3G24500 65 / 5e-15 multiprotein bridging factor 1C (.1.2) Lus10000056 [exp] 71 / 4e-17 AT2G42680 100 / 3e-29 ARABIDOPSIS THALIANA MULTIPROTEIN BRIDGING FACTOR 1A, multiprotein bridging factor 1A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G075200 [exp] 219 / 1e-74 AT3G24500 223 / 4e-76 multiprotein bridging factor 1C (.1.2) Potri.001G390400 [exp] 146 / 5e-46 AT3G58680 242 / 6e-84 multiprotein bridging factor 1B (.1) Potri.011G109500 [exp] 145 / 2e-45 AT3G58680 240 / 3e-83 multiprotein bridging factor 1B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF01381 [flax] [poplar] HTH_3 Helix-turn-helix CL0123 [flax] [poplar] PF08523 [flax] [poplar] MBF1 Multiprotein bridging factor 1
Representative CDS sequence Show only first row Show all	>Lus10034592 pacid=23162757 polypeptide=Lus10034592 locus=Lus10034592.g ID=Lus10034592.BGIv1.0 annot-version=v1.0 ATGCCGAGCAGACCTACCGGAGTTTTCTCCCAGGACTGGGAACCGGTGGTGCTGAGGAAGGCGAAGCCAACCAAATCTCAGGAACGCGATCCCAAGGCCG TCAACCAAGCTCTCCGTTCAGGCGCGCCTGTTCAGACGATCAAAAAATCCGACGCCGGATCGAACAAGAAGCCTACGTCGGCTCCGGTGGTTAACGCTCG TAAGCTGGACGAGGGAACGGAGCCGGCAGCTCTGGAGAAGGTAGCAGTGGAGGTGAGGCAGCTGATCCAGAAGGCTCGGCTGGAGAAGAAATGGAGCCAG GTTGAGCTGGCGAAGCAGATCAACGAGCCGACGAAAGTGGTGCAGGAGTACGAGAACGGGAAGGCGGTTCCGAACCAGGCGATCCTGGCGAAGATGGAGA GAGTGCTGGGCGTAAAGCTCAGGGGAAAGGTTTCCAAGTAG
AA sequence Show only first row Show all	>Lus10034592 pacid=23162757 polypeptide=Lus10034592 locus=Lus10034592.g ID=Lus10034592.BGIv1.0 annot-version=v1.0 MPSRPTGVFSQDWEPVVLRKAKPTKSQERDPKAVNQALRSGAPVQTIKKSDAGSNKKPTSAPVVNARKLDEGTEPAALEKVAVEVRQLIQKARLEKKWSQ VELAKQINEPTKVVQEYENGKAVPNQAILAKMERVLGVKLRGKVSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24500		MBF1C, ATMBF1C	multiprotein bridging factor 1...		Lus10034592 [exp]	0	1
AT3G10020			unknown protein		Lus10003372 [exp]	1.0	0.9889
AT2G32120		HSP70T-2	heat-shock protein 70T-2 (.1.2...		Lus10041207 [exp]	2.0	0.9571
AT5G49910		CPHSC70-2EATSHO...	HEAT SHOCK PROTEIN 70-7, chlor...		Lus10037357 [exp]	4.0	0.9634
AT4G15248	CO		B-box type zinc finger family ...		Lus10015097 [exp]	4.5	0.9463
AT2G46240		ATBAG6, BAG6	ARABIDOPSIS THALIANA BCL-2-ASS...		Lus10010133 [exp]	5.9	0.9549
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Lus10027518 [exp]	6.7	0.9620
AT2G38050		DWF6, DET2, ATD...	DWARF 6, DE-ETIOLATED 2, 3-oxo...		Lus10021127 [exp]	7.7	0.9152
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10023418 [exp]	8.1	0.9549
AT2G25140		HSP98.7, CLPB-M...	HEAT SHOCK PROTEIN 98.7, CASEI...		Lus10041018 [exp]	8.3	0.9312
AT2G47180		ATGOLS1	galactinol synthase 1 (.1)		Lus10031434 [exp]	8.7	0.9236

Compare expression of checked genes

Lus10034592 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.