Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16690 606 / 0 ORC3, ATORC3 origin recognition complex subunit 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021778 [exp] 221 / 6e-68 AT5G16690 194 / 8e-59 origin recognition complex subunit 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G077200 [exp] 725 / 0 AT5G16690 734 / 0.0 origin recognition complex subunit 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF07034 [flax] [poplar] ORC3_N Origin recognition complex (ORC) subunit 3 N-terminus
Representative CDS sequence Show only first row Show all	>Lus10034596 pacid=23162819 polypeptide=Lus10034596 locus=Lus10034596.g ID=Lus10034596.BGIv1.0 annot-version=v1.0 ATGGAGTCATTTTCTGTTCTTCACAAAGCATCATGTCACAAAGCTGAGAAAATATCAACTGGAACCGGGAAAACCAAAGCTAAGAGGCGGATTGACTTAA CTGCATCCGAACCTGCTAGCAGTGGGAACCTGGATGTGAGTTCTGCAGAGTTTAATGAATATCATTATTTGAATGTCCGGATGGAAGCATTTGATGCTGC GTGGTCAACAATAGAATCATCCATCAAGGATGTCCTGAGAAAAGTTAATGCTACCATCTTCAGTGAAATACATCGGTGGGTTCGTGATTCCTTTGACAGC CTTGTACCATTTGGAATCCCAACCGTACGTGAAGCAACACAGCCTTTTCCTATTCTCAAAGATGCTACATCTAAACAAATCTTTACAGGATTGATTTTAA CCAGAAATGTTGAATTTGTTGATGATCTGATGACATTTGAAAATCTTGGCCTACATTTGAAGTCTCAAGGTTGCCATGTGGCTAACCTTTCATCACTGGA TTTTTCTGCAAAAAATGGTGTTGGGGGTTGTTTAAGAAGCTTGTTAAGACAGTTCTTGATTGATGCACCTGATACGGCTGATATATCCATGTTGGCAACA TGGTACAAAGAGCAAGTAAATAGTGGCAATCCTGTGGTTATAATCCTTGACGATATGGAGCGATGTTGTCCGCCAGTTTTGTCCAATTTCATTCACATGT TGAGTGAATGGGTATTGAAGGTCCCTGTCATTTTGATAATGGGGGTTGCAACAACCATAGACGCCCCAAGAAATGTGCTTCCTTCAAGCGCACTACATTG TTTGCATGCTCAGAAGTTTACCTTGCAGAGTTTGTCAGAAAAAATGAATGCTGTCGTTAAGGCTGTTTTCCTGAATCAATGTTCTGAGTTCACAATAAGC CACAGGGCTGCTGTTCTTTTGAGAAATTACTTTGTAAACCAAGATGGCACTCTGACATCTTTCATAAGAGCTCTAAAGATAGCCTGTGCCCAACACTTTT CAACGCAGCCCCTGTCCTTCATACTCAATTGGTTTCTTCATGAAGATGACAATGAGGTTCCGCAAGGTGATATTTATGGATTTTCTGAAGAAAGGATGCT CAAGCTTGCTTTTGACCTTCCATCTTGGAATAGCGATGGCAACAAGACTGGTCAACTTAATGGAGAAACTTTAGTTCGTGAGTTATCGGAACTGAAGAAA TTTCAAAAGAATTGGAGAATGGTTGTTTTGTGCCTATATGAAGCTGTTGAGGGGGGTAATGTTCAACTGTTGGACTTGCTATGTGAGGCCCTTGATCCTA AAGGGCCATGTGTTGCTCAACGTGAGAGTGAATCCACAGTGCTATCAAGTGATAATTCCACCAGCCAAAGGCTTAATACTGGTGTAGCAAAGAAAGGTAT CATTCATCAAGTGGTACGCAATGTGAGGGATCTTCCACCAAAGCAGCTTTCTAAGCTTCTGAACGCCTGGGAAGAACACACGACTGATGTTCCTAAGATT CATTCCGAAGTTAAGGAGTTGCTCTCTTTGTTAAAGTTGGATGATCGGAAACGTTCGAATCAAAATAGGGTCGAAACAGTCAACACCAGGAGGCAAGCAT CAAGAGGGGGCATTGTGAATACACAGAAGAACTCAAACACTGTGAATGAGAAAGCTAGCAAACTAGTAGAGTTGATGATTCGAAAATATATGTGCCCGAT CGAGTGTGTGGCCTTTCACGAAGTTGTGTGTTTTAACAATGTTGATAAACTTCAAGCGGCTTTAGTTGGTGATACGAGACGAAGAATCCAAGTCGATCTT CAGGAGTTCCATGATATCATCCGTTGCAGCTGCTGCCGCAAGAGGGGCAGTACCCTTTTGCCATCAATGCCCGATTCCTCGATCATGTATTCACTGGCTC AGGAGCATGGGGATGTGGTTAATGTGCATGACTGGTATCAGTCATTTAAGTCCATCGTCCTTTCCATGCATACCGTTGCAAAGAAAGGGAAATCGAAGTC AAAGCGTTCTTCGCCATCGCCAAAGAAAAGAAAGATCACAACAAATGAACCTGCAAAGCCAAGTGAAGCTTCCATTCAGTATCCTTGTCCTTGCCTTATA TTCTACTCAACTTTGTTGTTCTTAGTCTCTGTTCTTGCCGTCATTAAGCTGCATACATTACCACCCTGA
AA sequence Show only first row Show all	>Lus10034596 pacid=23162819 polypeptide=Lus10034596 locus=Lus10034596.g ID=Lus10034596.BGIv1.0 annot-version=v1.0 MESFSVLHKASCHKAEKISTGTGKTKAKRRIDLTASEPASSGNLDVSSAEFNEYHYLNVRMEAFDAAWSTIESSIKDVLRKVNATIFSEIHRWVRDSFDS LVPFGIPTVREATQPFPILKDATSKQIFTGLILTRNVEFVDDLMTFENLGLHLKSQGCHVANLSSLDFSAKNGVGGCLRSLLRQFLIDAPDTADISMLAT WYKEQVNSGNPVVIILDDMERCCPPVLSNFIHMLSEWVLKVPVILIMGVATTIDAPRNVLPSSALHCLHAQKFTLQSLSEKMNAVVKAVFLNQCSEFTIS HRAAVLLRNYFVNQDGTLTSFIRALKIACAQHFSTQPLSFILNWFLHEDDNEVPQGDIYGFSEERMLKLAFDLPSWNSDGNKTGQLNGETLVRELSELKK FQKNWRMVVLCLYEAVEGGNVQLLDLLCEALDPKGPCVAQRESESTVLSSDNSTSQRLNTGVAKKGIIHQVVRNVRDLPPKQLSKLLNAWEEHTTDVPKI HSEVKELLSLLKLDDRKRSNQNRVETVNTRRQASRGGIVNTQKNSNTVNEKASKLVELMIRKYMCPIECVAFHEVVCFNNVDKLQAALVGDTRRRIQVDL QEFHDIIRCSCCRKRGSTLLPSMPDSSIMYSLAQEHGDVVNVHDWYQSFKSIVLSMHTVAKKGKSKSKRSSPSPKKRKITTNEPAKPSEASIQYPCPCLI FYSTLLFLVSVLAVIKLHTLPP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16690		ORC3, ATORC3	origin recognition complex sub...		Lus10034596 [exp]	0	1
AT2G05250			DNAJ heat shock N-terminal dom...		Lus10001171 [exp]	1.0	0.8904
AT4G18530			Protein of unknown function (D...		Lus10002991 [exp]	1.7	0.8487
AT2G36240			pentatricopeptide (PPR) repeat...		Lus10017041 [exp]	2.0	0.8750
AT5G03250			Phototropic-responsive NPH3 fa...		Lus10040409 [exp]	2.6	0.8320
AT1G01580		FRD1, ATFRO2, F...	FERRIC CHELATE REDUCTASE DEFEC...		Lus10027507 [exp]	3.5	0.8406
AT5G39360		EDL2	EID1-like 2 (.1)		Lus10042699 [exp]	5.1	0.8172
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10021656 [exp]	6.3	0.8065
AT4G24470	GATA	GATA25, TIFY1, ...	Zinc-finger protein expressed ...		Lus10042865 [exp]	7.5	0.8288
AT2G32900		ATZW10	centromere/kinetochore protein...		Lus10029956 [exp]	8.2	0.7801
AT5G41120			Esterase/lipase/thioesterase f...		Lus10012560 [exp]	8.5	0.8326

Compare expression of checked genes

Lus10034596 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.