Plant FIBer expression Database

Lus10034597 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G18490 69 / 1e-11 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021779
[exp]
1055 / 0 AT4G18490 72 / 1e-12 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G063500
[exp]
265 / 1e-76 AT4G18490 130 / 5e-31 unknown protein
PFAM info
Representative CDS sequence
>Lus10034597 pacid=23162794 polypeptide=Lus10034597 locus=Lus10034597.g ID=Lus10034597.BGIv1.0 annot-version=v1.0
ATGGCGGAAACGAAAAAGAAAGCTGATCGCAAAGAGAAGAAGTCATTGCAAGATGATGAAATTGGAGACGAATTCCTCGGATCTTGGAAGAAGATGTCAG
TTCCAGTTGATGATGCAATGGATTTCAACTTTGAAGCAGTTCCGAAGGGGAATAAGAAGGCATTCAACTTCGGGAACATGGACATGGATTTTAATCTGGA
TGGAGATTTTGATAAGCTATCGAACTTCAAGGTGGACATGGCAGACCTTGATTTCTCAAGCCCATCAGAGGATGCTTCAAAAACAAAGGCAAAACAGAAA
GGAGGATCCTCTAGTGGACGTCCGAAAGGAGGATTAGACCCCTTTGACTTCTCTTTTGATTTTAACGGCTTGGATGATTTCAACATTGATGGAAAATTGA
CAAAAGGAGATAAAGCTCCCCGGAAGCACACTGGGAAAAAGGGGGATCCTATGAAGGATAGTGAATGGCATGATCCTAAAATCATGATTTCTCAAGGAAC
TGATGGATCTGAAAGCAGCCAAACTGCAGAATGTCCAGCACCAGAGAAAGCAATCAATGAGATGGTCAAGGGAATTGGAAACTCTTTGAGCAGAGATGAT
AGCAGAAGACCTGAAGCTTTAGGTGATCACGTTGAACATGCAGCAAAAGAAGTATGTGGAGAAATAGTTGGTGTTACATTGGAAGGAACAAATCAAGAAA
GCCCATCTTTGGATGAAGGCATGTCTACGGATCAAGGAAACCCATCCTCGGCTGAAGGCATGTCTACAGATCAAGGAAACCCACCCTCGGTTGAAGGCAT
TCCCATAGATCGCTGTGCTGAATATGCTTTACAATCCACTCTGTCACAATCCCTTGGTGGTAGTGATTCTATCCAAGACACCACATCAGATGTACAGCCA
GCAGTTGTTTGCCTGGATTCTGGAGGAGATACGAAATCAGAAGAAGTGTCTGTCAATGATGACAACCAACTCAGAAAATCGTCTCCTTTGTGCACAAACG
ACCAGGATGTTAAGAAAGGTGAAAATAATGATATTCGCTCTGAGAGCACTGCAGAGGACACGAGAGAGATTGAGCCAGTGTCAAATGATAAAGATGCTGA
GGCTATTTTAACTGGAAGTCTCTCATTAAGAAAGTCAAATGATTGTAATGTCAGCGAGGATAATCAACAGGCAAGCTACTTGGTGTCAACAGAAAAGGAA
CCTGCAACTGATAGGGTTGCATTGACAATGGAAGAAGATGCGAGAGTTGTTCGGTCAAAATTTTTTAGGAAATCAGGGGATGTTAAACTGTCTCTTGCTT
CATCTGGTGTACAAAAATCATTGTTTGGTAGTTCTCCATTCGCTCTCAAGCAGTTGAATCGCCCTGGAACCGTGACACAGGATGACTTCAGCTCTAGCGA
TGTCCAAACTGGGAGAAACTTGGGTAGTCAATTGAAGTCACTCTCTAGGGAGTTGAAAAAAGGCGTACCTTCACTGGGAGGTGGAAACAATGTTAAGAGT
ACAGTTAACCCCAGTTTTAGTAAGGATCATAAGGTTGGTGGAGGGCAAGATAATAGGACGCCAGCTGATACTGCAATACTTCCTAATAAAGTGGTAGCAC
TAGGGGAACGTAGAGTTCTCAGAAGTTTAAGCAACAGGAAAGATCCTGCTGTAAATAATTGTTACGGTACATCCATCTTAACTGATAAGATGCCCAAGTT
GAACATCCAGAGAAATTTGAATTCCTCCGTTGCTGCTTCAACTATGAAAGCAATCCATGATTCAAAGATCATACCTGTTAAAGCGCTTAAATTTGACAAG
CAGATTCCTAGTCTTTCCAGCTTACACATTTCAAGGGATACGGAAGTAAGTAGGGATCGGGCGAATGCGCCTAGCAAACCCTTGAAAGGTATTTCCAAAG
CCACAAAAGCACAAGAAAATGCAACGGCCCAAATTGGTCATCCTGTCACTGAAGAGCAGAGGACTTTGAAATCTCTGAAAAGAAACTCAGAGGCATTTAA
TGCTGATTTAATGCCATTGAATCCCCGTAAACGCATCTCTCCATTACGGGACACAAGCAGTGAAGTTGCAGATGAGTTTGGAAGCATGCTTCATGATATT
ACCGTCTCTGGTGTCATAATTTCAAAGGATGTGAACTTGGAAAAACCTGTTACCTCTCTGGCCACGGAAATTGATCGAGTTCAGATGGCTGCAGAATATG
GCAGAACGCTTGATGAGCTTTGCAGTAAGATGAGGAAAGTGATGGAGGACACGAAGGAGCTATCAGTGCGATCAATTGTGAACAACAATAGGTTACTTCT
ACTCAATCATCCAATGGTAGATGAGAAGATATCCTTTCAGTTTCATCCATTTTTTCAACGATATTCTTTCTGCTCTTAA
AA sequence
>Lus10034597 pacid=23162794 polypeptide=Lus10034597 locus=Lus10034597.g ID=Lus10034597.BGIv1.0 annot-version=v1.0
MAETKKKADRKEKKSLQDDEIGDEFLGSWKKMSVPVDDAMDFNFEAVPKGNKKAFNFGNMDMDFNLDGDFDKLSNFKVDMADLDFSSPSEDASKTKAKQK
GGSSSGRPKGGLDPFDFSFDFNGLDDFNIDGKLTKGDKAPRKHTGKKGDPMKDSEWHDPKIMISQGTDGSESSQTAECPAPEKAINEMVKGIGNSLSRDD
SRRPEALGDHVEHAAKEVCGEIVGVTLEGTNQESPSLDEGMSTDQGNPSSAEGMSTDQGNPPSVEGIPIDRCAEYALQSTLSQSLGGSDSIQDTTSDVQP
AVVCLDSGGDTKSEEVSVNDDNQLRKSSPLCTNDQDVKKGENNDIRSESTAEDTREIEPVSNDKDAEAILTGSLSLRKSNDCNVSEDNQQASYLVSTEKE
PATDRVALTMEEDARVVRSKFFRKSGDVKLSLASSGVQKSLFGSSPFALKQLNRPGTVTQDDFSSSDVQTGRNLGSQLKSLSRELKKGVPSLGGGNNVKS
TVNPSFSKDHKVGGGQDNRTPADTAILPNKVVALGERRVLRSLSNRKDPAVNNCYGTSILTDKMPKLNIQRNLNSSVAASTMKAIHDSKIIPVKALKFDK
QIPSLSSLHISRDTEVSRDRANAPSKPLKGISKATKAQENATAQIGHPVTEEQRTLKSLKRNSEAFNADLMPLNPRKRISPLRDTSSEVADEFGSMLHDI
TVSGVIISKDVNLEKPVTSLATEIDRVQMAAEYGRTLDELCSKMRKVMEDTKELSVRSIVNNNRLLLLNHPMVDEKISFQFHPFFQRYSFCS

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G18490 unknown protein Lus10034597
[exp]
0 1
AT4G18490 unknown protein Lus10021779
[exp]
2.8 0.8695
Lus10025603
[exp]
3.0 0.8114
AT5G55060 unknown protein Lus10000118
[exp]
4.9 0.8102
AT5G14720 Protein kinase superfamily pro... Lus10032144
[exp]
8.5 0.8438
AT1G77850 ARF ARF17 auxin response factor 17 (.1) Lus10009770
[exp]
9.2 0.8139
AT3G12020 P-loop containing nucleoside t... Lus10016236
[exp]
10.7 0.8225
AT2G22010 RKP related to KPC1 (.1.2) Lus10016817
[exp]
11.0 0.8468
AT4G28600 NPGR2 no pollen germination related ... Lus10023748
[exp]
11.8 0.8135
AT5G52530 dentin sialophosphoprotein-rel... Lus10014955
[exp]
13.1 0.8029
AT3G04240 SEC secret agent, Tetratricopeptid... Lus10003112
[exp]
13.3 0.7449

Lus10034597 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.