Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14860 241 / 3e-82 ATNUDT18 nudix hydrolase homolog 18 (.1) AT2G01670 234 / 2e-79 ATNUDT17 nudix hydrolase homolog 17 (.1) AT1G18300 196 / 5e-64 ATNUDT4 nudix hydrolase homolog 4 (.1) AT1G73540 192 / 1e-62 ATNUDT21 nudix hydrolase homolog 21 (.1) AT3G26690 127 / 6e-37 ATNUDX13, ATNUDT13 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13, nudix hydrolase homolog 13 (.1.2) AT1G12880 126 / 1e-36 ATNUDT12 nudix hydrolase homolog 12 (.1) AT3G12600 120 / 2e-34 ATNUDT16 nudix hydrolase homolog 16 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021780 [exp] 343 / 3e-122 AT1G14860 244 / 2e-83 nudix hydrolase homolog 18 (.1) Lus10001598 [exp] 300 / 4e-105 AT1G14860 252 / 1e-86 nudix hydrolase homolog 18 (.1) Lus10003713 [exp] 249 / 3e-85 AT1G14860 213 / 8e-71 nudix hydrolase homolog 18 (.1) Lus10008660 [exp] 138 / 3e-41 AT3G12600 221 / 6e-74 nudix hydrolase homolog 16 (.1.2) Lus10026164 [exp] 136 / 1e-40 AT3G12600 221 / 1e-74 nudix hydrolase homolog 16 (.1.2) Lus10024137 [exp] 107 / 2e-29 AT3G12600 211 / 1e-70 nudix hydrolase homolog 16 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G107300 [exp] 259 / 3e-89 AT2G01670 223 / 2e-75 nudix hydrolase homolog 17 (.1) Potri.008G134000 [exp] 251 / 2e-86 AT2G01670 218 / 3e-73 nudix hydrolase homolog 17 (.1) Potri.017G131000 [exp] 209 / 2e-69 AT2G01670 223 / 6e-75 nudix hydrolase homolog 17 (.1) Potri.004G085600 [exp] 200 / 5e-66 AT1G14860 206 / 2e-68 nudix hydrolase homolog 18 (.1) Potri.015G035000 [exp] 199 / 3e-64 AT1G18300 195 / 2e-62 nudix hydrolase homolog 4 (.1) Potri.012G044300 [exp] 192 / 8e-63 AT1G18300 199 / 5e-65 nudix hydrolase homolog 4 (.1) Potri.003G194900 [exp] 139 / 4e-42 AT3G12600 226 / 2e-76 nudix hydrolase homolog 16 (.1.2) Potri.001G029500 [exp] 137 / 1e-41 AT3G12600 219 / 5e-74 nudix hydrolase homolog 16 (.1.2) Potri.001G069200 [exp] 119 / 1e-34 AT1G12880 219 / 2e-73 nudix hydrolase homolog 12 (.1) Potri.003G161100 [exp] 119 / 9e-34 AT1G12880 213 / 4e-70 nudix hydrolase homolog 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [flax] [poplar] NUDIX PF00293 [flax] [poplar] NUDIX NUDIX domain
Representative CDS sequence Show only first row Show all	>Lus10034598 pacid=23162821 polypeptide=Lus10034598 locus=Lus10034598.g ID=Lus10034598.BGIv1.0 annot-version=v1.0 ATGGTTTGTTTGGTAGCAAGAACTGGAAGGGAGTTGCAGAGATACAATCCGACAGGCGGCCGTCAAGTCGTCGGATGCATTCCTTACAGATATAAGAGCT ACGACGATGGGTCGATCTCCGATGAATTGGAGGTTCTTGTAATCTCATCTCAAAAGGGTGGTTCTGGAATGATGTTCCCCAAGGGTGGTTGGGAACTAGA TGAATCTGAGCAAGAAGCTGCTTCAAGAGAGTCTTTTGAGGAGGCTGGAGTTCTTGGCACAGTTGAGGATCAACTGGGGAAATGGAACTTCATGAGCAAG AGAAATGGGATATTCTATGAAGGGTATATGTTCCCTTTGCTAGTTAATGAGGAGCTTGATTTCTGGCCAGAGAGTCCTGTACGGAAGAGGCTTTGGTTGA CTGTGGATGAGGCCAGAGATGCTTGCAGGCACTGGTGGATGAAGGAAGCTCTTGATTTGCTAGTTGAACGACTCAACTGCTTAAAGACTGATTCTGAGGA AGAAGACGATAATAACCAGGGAGAAGAGCAAGTGGTGACTTGCAGGCTTAGTTAG
AA sequence Show only first row Show all	>Lus10034598 pacid=23162821 polypeptide=Lus10034598 locus=Lus10034598.g ID=Lus10034598.BGIv1.0 annot-version=v1.0 MVCLVARTGRELQRYNPTGGRQVVGCIPYRYKSYDDGSISDELEVLVISSQKGGSGMMFPKGGWELDESEQEAASRESFEEAGVLGTVEDQLGKWNFMSK RNGIFYEGYMFPLLVNEELDFWPESPVRKRLWLTVDEARDACRHWWMKEALDLLVERLNCLKTDSEEEDDNNQGEEQVVTCRLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14860		ATNUDT18	nudix hydrolase homolog 18 (.1...		Lus10034598 [exp]	0	1
AT3G09830			Protein kinase superfamily pro...		Lus10038711 [exp]	1.0	0.8945
AT2G38480			Uncharacterised protein family...		Lus10012216 [exp]	2.0	0.8837
AT1G06410		ATTPSA, ATTPS7	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10005425 [exp]	3.5	0.8622
AT3G27820		ATMDAR4	monodehydroascorbate reductase...		Lus10013079 [exp]	4.6	0.8727
AT4G30780			unknown protein		Lus10035819 [exp]	5.0	0.8517
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Lus10011578 [exp]	5.7	0.8261
AT1G48300			unknown protein		Lus10009975 [exp]	6.9	0.8180
AT5G67140			F-box/RNI-like superfamily pro...		Lus10024178 [exp]	9.9	0.8133
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10012319 [exp]	11.0	0.8434
AT1G53050			Protein kinase superfamily pro...		Lus10033684 [exp]	11.8	0.8320

Compare expression of checked genes

Lus10034598 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.