Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24610 598 / 0 Rubisco methyltransferase family protein (.1) AT1G14030 70 / 1e-12 Rubisco methyltransferase family protein (.1) AT4G20130 64 / 1e-10 PTAC14 plastid transcriptionally active 14 (.1) AT1G01920 50 / 2e-06 SET domain-containing protein (.1.2) AT3G07670 49 / 6e-06 Rubisco methyltransferase family protein (.1) AT3G55080 47 / 2e-05 SET domain-containing protein (.1.2) AT5G14260 44 / 0.0002 Rubisco methyltransferase family protein (.1.2.3) AT5G17240 43 / 0.0004 SDG40 SET domain group 40 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021783 [exp] 844 / 0 AT1G24610 643 / 0.0 Rubisco methyltransferase family protein (.1) Lus10006942 [exp] 66 / 4e-11 AT4G20130 683 / 0.0 plastid transcriptionally active 14 (.1) Lus10036780 [exp] 57 / 2e-08 AT1G14030 643 / 0.0 Rubisco methyltransferase family protein (.1) Lus10016435 [exp] 50 / 2e-06 AT1G01920 680 / 0.0 SET domain-containing protein (.1.2) Lus10006953 [exp] 50 / 4e-06 AT2G18850 548 / 0.0 SET domain-containing protein (.1.2) Lus10041585 [exp] 49 / 8e-06 AT5G14260 765 / 0.0 Rubisco methyltransferase family protein (.1.2.3) Lus10022333 [exp] 49 / 8e-06 AT5G14260 753 / 0.0 Rubisco methyltransferase family protein (.1.2.3) Lus10012309 [exp] 48 / 1e-05 AT3G07670 756 / 0.0 Rubisco methyltransferase family protein (.1) Lus10025463 [exp] 47 / 3e-05 AT2G18850 525 / 0.0 SET domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G134200 [exp] 649 / 0 AT1G24610 639 / 0.0 Rubisco methyltransferase family protein (.1) Potri.003G155100 [exp] 75 / 3e-14 AT4G20130 679 / 0.0 plastid transcriptionally active 14 (.1) Potri.008G090500 [exp] 65 / 5e-11 AT1G14030 630 / 0.0 Rubisco methyltransferase family protein (.1) Potri.008G047400 [exp] 55 / 6e-08 AT3G55080 511 / 1e-179 SET domain-containing protein (.1.2) Potri.014G169300 [exp] 45 / 0.0001 AT3G07670 754 / 0.0 Rubisco methyltransferase family protein (.1) Potri.014G077700 [exp] 44 / 0.0003 AT1G01920 729 / 0.0 SET domain-containing protein (.1.2) Potri.017G066500 [exp] 44 / 0.0003 AT5G14260 783 / 0.0 Rubisco methyltransferase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09273 [flax] [poplar] Rubis-subs-bind Rubisco LSMT substrate-binding
Representative CDS sequence Show only first row Show all	>Lus10034599 pacid=23162739 polypeptide=Lus10034599 locus=Lus10034599.g ID=Lus10034599.BGIv1.0 annot-version=v1.0 ATGGCTGCTTCCAAATTCGTCGCCGCTGCCTCCTTAACGCACTGCCGTCCTTTAACCTGCGCCGCCGCCGGCGGTGGTGCTGCTTCCACCTCAGTCTCGT CATACAGCTCACGCCTCGTCGCTTATCCTCCAGACCTAATTAAATGGGTAAGGCGTGAAGGTGGGTTTGTCCACCAGGCCGTCAAATTTTCACAAGACGA ATCCAATGGTCTTGGCCTCATCGCCTCTCAGCCAATCCCTAAAGGCTCTCAGCTCATTGCTCTTCCCGATCACATTCCTCTAAAATATGGAGCTACTTCC TGCCTGGAAGCCGCCGGAGACGATGCAGCTGGTGCTTCCGTTTTGGCCAATTTGGCTCGGCCGGTCCCTGAGGAACTATGGGCAATGAAATTGGGTTTGA AGCTTCTCCAAGAAAGAGCGAAGGCTGGATCCTTTTGGTGGCCATACATCAGCAATCTACCCGAGGCATACACTGTGCCTATCTTTTTCCCAGGGGAGGA TATCAAGAACCTACAGTATGCTCCTCTTCTCCACCAGGTAAACAAAAGATGCCGGTTTCTTCTCGAGTTTGAGCAACTAGTAAAGCGTACGCTTGAGAAT CTGAGGCCAAGTGATCACCCTTTTAGTGGTCAGAGCATTGATGCATCGTCGCTTGGATGGGCAATGTCTGCTGTCTCATCTAGAGCATTCCGCTTGCATG GAGAAAAGCTTCCTGGTGGGGGACACGCGGATGTTCCTATGCTGCTTCCATTGATCGATATGTGCAACCATAGCTTTAATCCAAATGCACGAATTGTTCA GGAGCAAGGCATAGTTAGGCTAATCAATTATGGCTCTTTGAGCAACGATCTTTTCTTATTGGATTATGGATTTGTGGTGCCTTCAAATCCATACGACTGC ATTGAGCTCAAATTTGATGGGGCTCTTCTTGATGCTGCAAGCGAGGCTGCTGGGGTCTCTTCTCCTAACTTCTCGTCACCCGCTCCTTGGCAGAAAGACA TCTTATCCCAGCTCAATTTAGATGGAGATGCTCCTAATCTCAAGGTAACAATAGGCGGCAAGGACCTAGTAGAGGGCAGATTGATGGCAGCACTCCGAGT GATGCTTGCAAGCGAAAGAGAAACGGTGGAGAAGCATGATCTGAGCACTCTAAAGTCCCTGTCCTCTGATGCACCACTCGGTAACGAAAACGAGGTAGCT GCATTACGCACTGTAATCGCTCTGTGCGTGATTGCACTGGGCCACTTCCCCACCAAAATGATGGAGGACGAGGCTTTACTGAAGAAAGGCGACGTATCGA GCACAGGTGAACTAGCTATCCAGTTTAGAATCCAGAAGAAGTCTTTGATCATAGATGTGATGAGAGATCTGACAAGGAAGGTGAAGTTGCTGTTGTCCAA GGACATGGCTTAG
AA sequence Show only first row Show all	>Lus10034599 pacid=23162739 polypeptide=Lus10034599 locus=Lus10034599.g ID=Lus10034599.BGIv1.0 annot-version=v1.0 MAASKFVAAASLTHCRPLTCAAAGGGAASTSVSSYSSRLVAYPPDLIKWVRREGGFVHQAVKFSQDESNGLGLIASQPIPKGSQLIALPDHIPLKYGATS CLEAAGDDAAGASVLANLARPVPEELWAMKLGLKLLQERAKAGSFWWPYISNLPEAYTVPIFFPGEDIKNLQYAPLLHQVNKRCRFLLEFEQLVKRTLEN LRPSDHPFSGQSIDASSLGWAMSAVSSRAFRLHGEKLPGGGHADVPMLLPLIDMCNHSFNPNARIVQEQGIVRLINYGSLSNDLFLLDYGFVVPSNPYDC IELKFDGALLDAASEAAGVSSPNFSSPAPWQKDILSQLNLDGDAPNLKVTIGGKDLVEGRLMAALRVMLASERETVEKHDLSTLKSLSSDAPLGNENEVA ALRTVIALCVIALGHFPTKMMEDEALLKKGDVSSTGELAIQFRIQKKSLIIDVMRDLTRKVKLLLSKDMA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24610			Rubisco methyltransferase fami...		Lus10034599 [exp]	0	1
AT1G19720			Pentatricopeptide repeat (PPR-...		Lus10001230 [exp]	2.4	0.9371
AT5G22640		EMB1211	embryo defective 1211, MORN (M...		Lus10009392 [exp]	7.7	0.9259
AT5G22640		EMB1211	embryo defective 1211, MORN (M...		Lus10020545 [exp]	8.5	0.9283
AT3G26744	bHLH	SCRM, ATICE1, I...	SCREAM, A. THALIANA INDUCER OF...		Lus10032542 [exp]	10.0	0.9228
AT4G37510			Ribonuclease III family protei...		Lus10011533 [exp]	12.8	0.9231
AT2G15820		OTP51	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10012055 [exp]	14.3	0.9137
AT1G24610			Rubisco methyltransferase fami...		Lus10021783 [exp]	15.6	0.9169
AT5G15700			DNA/RNA polymerases superfamil...		Lus10035150 [exp]	16.8	0.9208
AT2G18940			Tetratricopeptide repeat (TPR)...		Lus10006962 [exp]	17.0	0.8890
AT5G03940		SRP54CP, CPSRP5...	SIGNAL RECOGNITION PARTICLE 54...		Lus10021346 [exp]	17.2	0.9179

Compare expression of checked genes

Lus10034599 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.