Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47950 140 / 5e-37 HXXXD-type acyl-transferase family protein (.1) AT3G26040 114 / 2e-27 HXXXD-type acyl-transferase family protein (.1) AT1G24420 112 / 8e-27 HXXXD-type acyl-transferase family protein (.1) AT1G24430 107 / 4e-25 HXXXD-type acyl-transferase family protein (.1) AT3G30280 100 / 7e-23 HXXXD-type acyl-transferase family protein (.1) AT4G15390 89 / 4e-19 HXXXD-type acyl-transferase family protein (.1) AT5G41040 79 / 2e-15 HXXXD-type acyl-transferase family protein (.1.2) AT4G15400 76 / 1e-14 HXXXD-type acyl-transferase family protein (.1) AT5G23970 74 / 3e-14 HXXXD-type acyl-transferase family protein (.1) AT3G48720 72 / 3e-13 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036077 [exp] 583 / 0 AT1G24420 188 / 2e-54 HXXXD-type acyl-transferase family protein (.1) Lus10036126 [exp] 579 / 0 AT3G26040 189 / 6e-55 HXXXD-type acyl-transferase family protein (.1) Lus10001107 [exp] 332 / 1e-109 AT3G26040 193 / 2e-56 HXXXD-type acyl-transferase family protein (.1) Lus10000319 [exp] 250 / 5e-78 AT3G26040 198 / 2e-58 HXXXD-type acyl-transferase family protein (.1) Lus10004441 [exp] 247 / 4e-77 AT3G26040 196 / 2e-57 HXXXD-type acyl-transferase family protein (.1) Lus10012759 [exp] 232 / 7e-71 AT3G26040 209 / 3e-62 HXXXD-type acyl-transferase family protein (.1) Lus10042994 [exp] 208 / 3e-62 AT3G26040 184 / 3e-53 HXXXD-type acyl-transferase family protein (.1) Lus10016353 [exp] 204 / 2e-60 AT3G26040 201 / 1e-59 HXXXD-type acyl-transferase family protein (.1) Lus10002893 [exp] 191 / 1e-55 AT5G47950 195 / 2e-57 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G124156 [exp] 186 / 1e-53 AT3G26040 284 / 2e-91 HXXXD-type acyl-transferase family protein (.1) Potri.011G124128 [exp] 182 / 2e-52 AT3G26040 282 / 1e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124184 [exp] 182 / 2e-52 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124300 [exp] 182 / 2e-52 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.008G033500 [exp] 182 / 7e-52 AT3G26040 290 / 3e-93 HXXXD-type acyl-transferase family protein (.1) Potri.011G124500 [exp] 181 / 8e-52 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124268 [exp] 181 / 8e-52 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.008G034100 [exp] 172 / 1e-48 AT3G26040 270 / 4e-86 HXXXD-type acyl-transferase family protein (.1) Potri.008G034300 [exp] 172 / 2e-48 AT3G26040 280 / 1e-89 HXXXD-type acyl-transferase family protein (.1) Potri.008G034200 [exp] 159 / 7e-44 AT3G26040 254 / 9e-80 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10034600 pacid=23162802 polypeptide=Lus10034600 locus=Lus10034600.g ID=Lus10034600.BGIv1.0 annot-version=v1.0 ATGGGAGTGGAAGTGATATCAGTGGAGAAGATAAAGCCAACATTAATTGCAAGAGGAGGAGAAGGAGGGGAACTTGACGATGCTTTCAAGCTCTGCCTTA TTGATCAGCTGATGGTCAGAAGTTATTTTGGAATCGTCATCTTCTATCCTCCGCCACCACCTGCAACTAATTCTTATAACAATGAAGAAGAAGAAGAAGA AAAGAATAAGGCCGTCGGGAAGCAGCTGAAATCCACTCTCTCCAAGGCACTCAACACCTTCTACCCATTATCCGGCAGGGTTAAGGGAAACCTCACCGTT GATGACTTCCAAGCTGGTGTCCCATTCACCGAAACTCGCGTTAAGGGGTACGATCGTCTTTCCGACTTTCTCAAATCTCCCGATTTGGAATTCCTCAACC ATTTGTCTCCCGCTGAGACCTTCGCTCTCACCACAACCTACGATGAGCCACAACCGCCGCCACTTCTAGTCCAAGTCAACGCCTTTCCTTGCGGCGGCAT TGCTCTTGGTCTCTGCTTCAATCACAAGCTCGTCGATGGCGCTACCGCCGATGCATTCCTCAACACCTGGGCTTCATATTCCCATTCTCATCACCATCAT CATCATCATGATCTAATCTCCACACAAGCCTCCTCGGTTTTCCCTCCCAGAGAATCAATTCCTGCAGAGCTTTCATATGCTGCTGACAACTGTTACCACC GGAATCGTAAAACCAGCACCAAAAGTATTAGCCTTCATTTGGAAATCCATCGTGGCCTCAACTCCAACCGATACTCTGCCCCGCAGAATCTCATCCTAGG AGTTAATCTACGATATCGAATGAAGAAATCATCATCAGAAGAAGAGGACAAGCGGCACATCCCCTTTGGAAATCTTGTCTTCACGGCAGGGGCATCAATG TCAAATAGCAGCACAACTGATGATGATGATGATCATGAGATGATGTGTGATCTAGTTCAACTTATACGGACAGGTGTTGCAAGTATCGATGAAAACTTTG TAAATTCCATGGCCTCATCTACAGGTTTGGATGGAGTCCACATGTTTGGAGAATTAGGTTCGCAACTTCTGACAACCACGAGCTGGATCAGGTTTTGCTT CAGTGATGCTGACTTTGGGTTTGGAAACCCAGTGTGGACTAGTGTGCTTGGAGAAGCCAGCGGGGATTATCCTAGTTACAATAACTTGGTCATTCTCACT GAGTTATTAGCTGATCATCCCAACAAAGCTACTACTACTACTAGTACTAGTGGTCGTGGAATAGAGGCATGGATCAGGCTGGATGTTGAGGTGATGAATC TTCTTCAGCAGAATACAAACTTCCTTCAATTTGCTTCCATCAATCCTCCTGTGCTTTTCTGA
AA sequence Show only first row Show all	>Lus10034600 pacid=23162802 polypeptide=Lus10034600 locus=Lus10034600.g ID=Lus10034600.BGIv1.0 annot-version=v1.0 MGVEVISVEKIKPTLIARGGEGGELDDAFKLCLIDQLMVRSYFGIVIFYPPPPPATNSYNNEEEEEEKNKAVGKQLKSTLSKALNTFYPLSGRVKGNLTV DDFQAGVPFTETRVKGYDRLSDFLKSPDLEFLNHLSPAETFALTTTYDEPQPPPLLVQVNAFPCGGIALGLCFNHKLVDGATADAFLNTWASYSHSHHHH HHHDLISTQASSVFPPRESIPAELSYAADNCYHRNRKTSTKSISLHLEIHRGLNSNRYSAPQNLILGVNLRYRMKKSSSEEEDKRHIPFGNLVFTAGASM SNSSTTDDDDDHEMMCDLVQLIRTGVASIDENFVNSMASSTGLDGVHMFGELGSQLLTTTSWIRFCFSDADFGFGNPVWTSVLGEASGDYPSYNNLVILT ELLADHPNKATTTTSTSGRGIEAWIRLDVEVMNLLQQNTNFLQFASINPPVLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G30280			HXXXD-type acyl-transferase fa...		Lus10034600 [exp]	0	1
AT3G02065			P-loop containing nucleoside t...		Lus10008509 [exp]	5.1	0.7968
AT1G25290		ATRBL10	RHOMBOID-like protein 10 (.1.2...		Lus10022969 [exp]	10.2	0.7354
AT5G45780			Leucine-rich repeat protein ki...		Lus10029241 [exp]	10.7	0.7526
AT5G19950			Domain of unknown function (DU...		Lus10043254 [exp]	13.9	0.7344
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10040964 [exp]	15.6	0.7601
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Lus10021136 [exp]	21.6	0.7414
AT1G78930			Mitochondrial transcription te...		Lus10037301 [exp]	34.6	0.6556
AT3G49890			unknown protein		Lus10019282 [exp]	42.0	0.6997
AT3G29010			Biotin/lipoate A/B protein lig...		Lus10017321 [exp]	42.8	0.7181
AT3G29270			RING/U-box superfamily protein...		Lus10015732 [exp]	49.7	0.7032

Compare expression of checked genes

Lus10034600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.