Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73670 543 / 0 ATMPK15 MAP kinase 15 (.1) AT3G18040 536 / 0 ATMPK9 MAP kinase 9 (.1.2) AT2G01450 533 / 0 ATMPK17 MAP kinase 17 (.1.2.3.4) AT1G18150 514 / 5e-179 ATMPK8 Protein kinase superfamily protein (.1.2.3) AT5G19010 502 / 9e-175 ATMPK16 mitogen-activated protein kinase 16 (.1) AT2G42880 488 / 1e-168 ATMPK20 MAP kinase 20 (.1) AT3G14720 474 / 2e-163 ATMPK19 ARABIDOPSIS THALIANA MAP KINASE 19, MAP kinase 19 (.1) AT1G53510 466 / 6e-160 ATMPK18 ARABIDOPSIS THALIANA MAP KINASE 18, mitogen-activated protein kinase 18 (.1) AT4G01370 248 / 3e-78 ATMPK4 MAP kinase 4 (.1) AT4G11330 248 / 7e-78 ATMPK5 MAP kinase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021784 [exp] 838 / 0 AT1G73670 706 / 0.0 MAP kinase 15 (.1) Lus10038956 [exp] 521 / 0 AT3G18040 817 / 0.0 MAP kinase 9 (.1.2) Lus10041234 [exp] 506 / 2e-176 AT5G19010 911 / 0.0 mitogen-activated protein kinase 16 (.1) Lus10013702 [exp] 482 / 3e-166 AT1G53510 845 / 0.0 ARABIDOPSIS THALIANA MAP KINASE 18, mitogen-activated protein kinase 18 (.1) Lus10005568 [exp] 481 / 2e-165 AT1G53510 853 / 0.0 ARABIDOPSIS THALIANA MAP KINASE 18, mitogen-activated protein kinase 18 (.1) Lus10027248 [exp] 473 / 7e-165 AT3G18040 741 / 0.0 MAP kinase 9 (.1.2) Lus10021945 [exp] 430 / 5e-146 AT5G19010 912 / 0.0 mitogen-activated protein kinase 16 (.1) Lus10018127 [exp] 253 / 6e-80 AT3G45640 652 / 0.0 mitogen-activated protein kinase 3 (.1) Lus10036136 [exp] 250 / 9e-79 AT3G45640 654 / 0.0 mitogen-activated protein kinase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G130000 [exp] 660 / 0 AT1G73670 697 / 0.0 MAP kinase 15 (.1) Potri.010G112200 [exp] 637 / 0 AT1G73670 687 / 0.0 MAP kinase 15 (.1) Potri.015G040300 [exp] 544 / 0 AT3G18040 767 / 0.0 MAP kinase 9 (.1.2) Potri.012G048600 [exp] 533 / 0 AT3G18040 793 / 0.0 MAP kinase 9 (.1.2) Potri.010G029700 [exp] 515 / 8e-180 AT5G19010 921 / 0.0 mitogen-activated protein kinase 16 (.1) Potri.008G200800 [exp] 513 / 8e-179 AT5G19010 922 / 0.0 mitogen-activated protein kinase 16 (.1) Potri.011G102500 [exp] 503 / 2e-174 AT3G14720 874 / 0.0 ARABIDOPSIS THALIANA MAP KINASE 19, MAP kinase 19 (.1) Potri.002G059900 [exp] 490 / 4e-169 AT2G42880 897 / 0.0 MAP kinase 20 (.1) Potri.005G201800 [exp] 487 / 6e-168 AT2G42880 904 / 0.0 MAP kinase 20 (.1) Potri.001G381300 [exp] 473 / 1e-162 AT3G14720 875 / 0.0 ARABIDOPSIS THALIANA MAP KINASE 19, MAP kinase 19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10034601 pacid=23162909 polypeptide=Lus10034601 locus=Lus10034601.g ID=Lus10034601.BGIv1.0 annot-version=v1.0 ATGTTGGACAAGGAGTTTTTCACCGAGTTTGGCGAGGCAAGCCAGTACGACATACAAGAAGTGGTTGGGAAAGGAAGCTATGGGATCGTTGCATCTGCTA TAGATACTCACACTGGGGAGAGAGTGGCAATCAAGAAGATGAACAACATCTTCGAGCATGTCTCTGATGCCACACGCATCTTGCGAGAGATCAAGCTCCT TCGCCTGCTTCGACACCCCGACATTGTCGAAATCAAGCACATTATGCTCCCTGCTTCCCCAAGGGAGTTTAAAGATATCTATGTCGTTTTCGAGTTGATG GAATCTGACCTCCACCAAGTGATCAAGCTCAACAACGACCTGACTCCTGATCATCACCAGTTCTTCTTGTACCAGCTTCTCAGAGCTCTGAAGTATATAC ATTCAGCTCATGATTATGTCGCGACTCGATGGTATCGTGCCCCGGAATTGTGTGGTTCCTTTTCTTCCAAGTACACGCCTGCAATTGATATTTGGAGCAT TGGGTGCATATTTGCGGAGTTGGTAACAGGCAAGCCCTTGTTTCCCGGCAAAAATGTGGTGCATCAATTGGAACTCATTACTGATTTGCTTGGCACTCCG CCTACCGAATCTGTTGCACGGATTAGGAACGAAAAAGCTAGGAAGTATTTGACTGGTATGAGTAAGAAACAGTCAATTCCATTCACCAAATATTTCCCTG GGAAAGACCCACGGGCTCTTCGCTTATTGGAGCGTATGCTAGCTTTTGATCCTAAAGATCGTCCATCTGCGGAAGAGGCTTTGGCTGATCCTTATTTTGA TGGTCTGGCGAATTTGGAGAACGAACCATCCAGGCAGCCCATTTCAAAGCTAGAGTTTGAGTTTGAAAGGAGAAGATTGACAAGAGATGATGTAAGAGAG TTGATCTATAGAGAGATATTGGAGTACCATCCTGAAATGCTAAAAGAGTACCTCCGAGGCATAGACCAGACTCACTTCATGTACCCAAGCGGAGTTGACT GGTGCAAGGAACAATTCGCCTCTCTTGAGGATGACAGCGGTGAATCTGAAAGAAACAGCCCTGTGCATAGGAAACACGCCACCTCTCTGCCAAGAGAGAG GGTGTGCGCCATTGACGAGCATGATGATCCGAAGAAGGGCTGTGACTGTTCTTATGGAGAGGATGTGAAGCGGAATTCAAATTCTATTACTCGTCCAGCG ACTGTGCAGAGCCCGAGCCCTCCTGCGGAGGAAGCGATATCATCTGGTAACGGGATTGGTGCAGTGAGTAAACAGAAGGGCAGCAGCAGTGGTGGCAACT CGATAACGCCCACTTGCAGCACTGGGCGTAGCCTGTTGAAGAGTGATAGTATGTGCGCTTCAAGGTGTGTCGGTGTTGTTGGAAGTGATAGGCAGGTTCA TGCTCGGTGA
AA sequence Show only first row Show all	>Lus10034601 pacid=23162909 polypeptide=Lus10034601 locus=Lus10034601.g ID=Lus10034601.BGIv1.0 annot-version=v1.0 MLDKEFFTEFGEASQYDIQEVVGKGSYGIVASAIDTHTGERVAIKKMNNIFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPASPREFKDIYVVFELM ESDLHQVIKLNNDLTPDHHQFFLYQLLRALKYIHSAHDYVATRWYRAPELCGSFSSKYTPAIDIWSIGCIFAELVTGKPLFPGKNVVHQLELITDLLGTP PTESVARIRNEKARKYLTGMSKKQSIPFTKYFPGKDPRALRLLERMLAFDPKDRPSAEEALADPYFDGLANLENEPSRQPISKLEFEFERRRLTRDDVRE LIYREILEYHPEMLKEYLRGIDQTHFMYPSGVDWCKEQFASLEDDSGESERNSPVHRKHATSLPRERVCAIDEHDDPKKGCDCSYGEDVKRNSNSITRPA TVQSPSPPAEEAISSGNGIGAVSKQKGSSSGGNSITPTCSTGRSLLKSDSMCASRCVGVVGSDRQVHAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73670		ATMPK15	MAP kinase 15 (.1)		Lus10034601 [exp]	0	1
AT1G73670		ATMPK15	MAP kinase 15 (.1)		Lus10021784 [exp]	1.0	0.9573
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Lus10018289 [exp]	1.4	0.9357
AT1G60995			unknown protein		Lus10014638 [exp]	4.9	0.9182
AT3G28630			Protein of unknown function (D...		Lus10015346 [exp]	10.1	0.8996
AT1G34750			Protein phosphatase 2C family ...		Lus10033453 [exp]	10.2	0.8946
AT3G27820		ATMDAR4	monodehydroascorbate reductase...		Lus10013079 [exp]	12.5	0.8808
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Lus10019601 [exp]	12.8	0.8797
AT2G01350		QPT	quinolinate phoshoribosyltrans...		Lus10018781 [exp]	13.4	0.9035
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10009916 [exp]	14.5	0.9092
					Lus10009362 [exp]	15.0	0.9077

Compare expression of checked genes

Lus10034601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.