Plant FIBer expression Database

Lus10034602 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G64880 540 / 0 Ribosomal protein S5 family protein (.1)
AT2G33800 92 / 4e-20 EMB3113 EMBRYO DEFECTIVE 3113, Ribosomal protein S5 family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021785
[exp]
850 / 0 AT1G64880 587 / 0.0 Ribosomal protein S5 family protein (.1)
Lus10025445
[exp]
71 / 3e-13 AT2G33800 357 / 3e-124 EMBRYO DEFECTIVE 3113, Ribosomal protein S5 family protein (.1)
Lus10015317
[exp]
71 / 5e-13 AT2G33800 358 / 2e-124 EMBRYO DEFECTIVE 3113, Ribosomal protein S5 family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G076200
[exp]
574 / 0 AT1G64880 532 / 0.0 Ribosomal protein S5 family protein (.1)
Potri.004G045700
[exp]
79 / 7e-16 AT2G33800 316 / 6e-108 EMBRYO DEFECTIVE 3113, Ribosomal protein S5 family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0196 DSRM PF00333 Ribosomal_S5 Ribosomal protein S5, N-terminal domain
CL0329 S5 PF03719 Ribosomal_S5_C Ribosomal protein S5, C-terminal domain
Representative CDS sequence
>Lus10034602 pacid=23162810 polypeptide=Lus10034602 locus=Lus10034602.g ID=Lus10034602.BGIv1.0 annot-version=v1.0
ATGCAAGGCACTCGTGTCCTTTTCCTTCGCCACCTAAAAAACATTAGAAGAGTTCCACACCCCCAAATTTGCACACAAATCAACTCTGCTTCACAATCAT
TAACCATCCATGAGCCCTCGTTCTCCCACTCCTCCAGAAGCTGCTTCTCAACGTCAGCTGACGAATCATCTGTCGAAGTGCGGGACCTTTTGGCAGAGGT
AGAAAGGGAGAAACAACGAGAAAGGGAGGCACGCAAGCGTGCAGGGTTGGACACTAAAGACATTGATGCTGAAGACGAGGAGGATTACATGGGAGTGGGG
CCTATGATTGAGAAATTAGAGAAAGAGAAGCTGAAAGATGTTGGTGACAAATTGCATATTTTTGAGGAGCCTTCTGATTCAGATAGTGACGAGGATGATG
AACGGTTTGAGCCAGATGCGATCACAAAAAGGTTTGAACAGTTTGAGAAGAAGCACAAACGGCATAAGGATTTGCTTGACAGTTTTACTTCTAGTGAAAC
ACTTGATGAGGCTTACAAATGGATGACTAGAATTGACAAGTTTGAGCAAAAGCATTTCAGGCTTCGGCTTGAGTACAGAGTCATTGGTGAATTGATGAAT
CGTCTGAAGGTAGCTGAAGGCAAGGAAAAATTCATTCTGCAACAAAAGATCAACAGAGCTTTAAGGATGGTGAACTGGAAGGAAGCTTATGATCCCAATG
ATCCAGCTAATTTTGGAGTCATCCAACACTCTCAGGTGGGATCGAATGTTGATCTCATTGATAGTGCTGACGTCGAAGATGAGAAGGAAAAAGTCCAGGC
AGATTCTGATGAGGAAGAGGAGTTTGATGATATGAAGGAAAGAGATGATATACTTCTACTGAAGTTGAATGCTATTGATAAGAAACTGGAGGATAAGTTA
GCTGAGTTGGATTATACATTTGGAAAGAAAGGCAAGTCTCTTGAAGAGGAGATTCGGGATCTGGCGGAGGAAAGGAATGCTCTGACAGAAAAGAAAAGGA
AACCAATGTATAGAAAGGGTTTTGATGTGAAACTGATTGATGTGAATCGAACTTGTAAAGTTACAAAGGGAGGGCAAGTTGTCAAGTACACTGCTATTCT
AGCTTGCGGGAATTATCATGGCGTTGTTGGTTTTGCCAAAGCTAAAGGCCCTGCAATCCCTATTGCTCTTCAGAAGGCGTATGAGAAGTGTTTTCAGAAT
CTCCACACTGTAGAACGACACGAGGAGCATACAATTGCGCATGCTATACAAACTGAATACAAGAAGACAAAGATCTATCTCTGGCCAGCATCGACTAGAA
CAGGTATGAAAGCAGGGAAAACTGTCCAAACCATTTTGAATCTGGCTGGTTTCAAGAATATCAAGTCTAAGGTTGTTGGCTCGAGAAATCCACACAACAC
TGTGAAGGCTCTTTTCAAAGCCCTGAATGCTATCGAAACTCCAAAGGATGTTCAAGAGAAGTTTGGCCGGACAGTGGGACCCAAAAGATTGGAGTTGGAT
ATGACTGTAGCCACGGGGGTTAATTTTCAAGATTGGATGATACAATCCTTTGAATCTTGGGATGACTTCAAAAACGAGCTGATGGTGAGAGTTCTATGGG
CGTGGTGGTGGGAACGATATGAAAGGGTTTTGCAGCGTTATTCGTCGACAATTATGACTGCGGTGACATGTGGTATGGAGACGATTAAGGAGTGCGAAGA
AGTGCGCCAGTTCATTGAGATTAAGCAAATATTCTAG
AA sequence
>Lus10034602 pacid=23162810 polypeptide=Lus10034602 locus=Lus10034602.g ID=Lus10034602.BGIv1.0 annot-version=v1.0
MQGTRVLFLRHLKNIRRVPHPQICTQINSASQSLTIHEPSFSHSSRSCFSTSADESSVEVRDLLAEVEREKQREREARKRAGLDTKDIDAEDEEDYMGVG
PMIEKLEKEKLKDVGDKLHIFEEPSDSDSDEDDERFEPDAITKRFEQFEKKHKRHKDLLDSFTSSETLDEAYKWMTRIDKFEQKHFRLRLEYRVIGELMN
RLKVAEGKEKFILQQKINRALRMVNWKEAYDPNDPANFGVIQHSQVGSNVDLIDSADVEDEKEKVQADSDEEEEFDDMKERDDILLLKLNAIDKKLEDKL
AELDYTFGKKGKSLEEEIRDLAEERNALTEKKRKPMYRKGFDVKLIDVNRTCKVTKGGQVVKYTAILACGNYHGVVGFAKAKGPAIPIALQKAYEKCFQN
LHTVERHEEHTIAHAIQTEYKKTKIYLWPASTRTGMKAGKTVQTILNLAGFKNIKSKVVGSRNPHNTVKALFKALNAIETPKDVQEKFGRTVGPKRLELD
MTVATGVNFQDWMIQSFESWDDFKNELMVRVLWAWWWERYERVLQRYSSTIMTAVTCGMETIKECEEVRQFIEIKQIF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G64880 Ribosomal protein S5 family pr... Lus10034602
[exp]
0 1
AT1G03110 TRM82, AtTRM82 tRNA modification 82, Transduc... Lus10014680
[exp]
2.6 0.8786
AT1G64880 Ribosomal protein S5 family pr... Lus10021785
[exp]
3.2 0.8592
AT5G20890 TCP-1/cpn60 chaperonin family ... Lus10028007
[exp]
4.9 0.8401
AT1G36240 Ribosomal protein L7Ae/L30e/S1... Lus10016431
[exp]
6.0 0.8526
AT3G16810 APUM24 pumilio 24 (.1) Lus10037712
[exp]
10.5 0.8482
AT2G44040 Dihydrodipicolinate reductase,... Lus10041701
[exp]
11.1 0.8509
AT5G25080 Sas10/Utp3/C1D family (.1) Lus10026882
[exp]
12.4 0.8136
AT4G29510 ATPRMT1B, ATPRM... PROTEIN ARGININE METHYLTRANSFE... Lus10008577
[exp]
13.9 0.7837
AT1G20370 Pseudouridine synthase family ... Lus10005641
[exp]
14.2 0.8311
AT1G64350 SEH1H Transducin/WD40 repeat-like su... Lus10001904
[exp]
14.5 0.8180

Lus10034602 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.