Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54980 149 / 4e-46 Uncharacterised protein family (UPF0497) (.1) AT1G17200 92 / 2e-23 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) AT3G14380 82 / 8e-20 Uncharacterised protein family (UPF0497) (.1) AT4G16442 49 / 2e-07 Uncharacterised protein family (UPF0497) (.1) AT4G25830 44 / 1e-05 Uncharacterised protein family (UPF0497) (.1) AT2G35760 40 / 0.0003 Uncharacterised protein family (UPF0497) (.1) AT2G27370 40 / 0.0004 CASP3 Casparian strip membrane domain protein 3, Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021788 [exp] 304 / 4e-107 AT5G54980 177 / 6e-57 Uncharacterised protein family (UPF0497) (.1) Lus10042471 [exp] 83 / 5e-20 AT1G17200 242 / 6e-82 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) Lus10026196 [exp] 82 / 2e-19 AT1G17200 241 / 1e-81 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) Lus10032005 [exp] 48 / 3e-07 AT4G15620 65 / 1e-13 Uncharacterised protein family (UPF0497) (.1) Lus10031998 [exp] 47 / 9e-07 AT4G15620 80 / 1e-18 Uncharacterised protein family (UPF0497) (.1) Lus10035168 [exp] 47 / 1e-06 AT4G15620 78 / 8e-18 Uncharacterised protein family (UPF0497) (.1) Lus10038800 [exp] 45 / 8e-06 AT2G35760 243 / 2e-82 Uncharacterised protein family (UPF0497) (.1) Lus10039060 [exp] 44 / 2e-05 AT2G35760 242 / 5e-82 Uncharacterised protein family (UPF0497) (.1) Lus10037160 [exp] 42 / 0.0001 AT1G14160 214 / 9e-71 Uncharacterised protein family (UPF0497) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G208300 [exp] 184 / 8e-60 AT5G54980 176 / 2e-56 Uncharacterised protein family (UPF0497) (.1) Potri.011G140200 [exp] 86 / 3e-21 AT1G17200 223 / 3e-74 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) Potri.008G052451 [exp] 76 / 1e-18 AT5G54980 88 / 2e-23 Uncharacterised protein family (UPF0497) (.1) Potri.001G436400 [exp] 78 / 7e-18 AT1G17200 245 / 1e-82 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) Potri.017G062100 [exp] 54 / 2e-09 AT4G25040 82 / 6e-20 Uncharacterised protein family (UPF0497) (.1) Potri.001G323700 [exp] 50 / 8e-08 AT4G15620 75 / 8e-17 Uncharacterised protein family (UPF0497) (.1) Potri.015G103600 [exp] 46 / 2e-06 AT4G25040 90 / 9e-23 Uncharacterised protein family (UPF0497) (.1) Potri.012G104300 [exp] 44 / 1e-05 AT4G25040 97 / 7e-26 Uncharacterised protein family (UPF0497) (.1) Potri.006G208800 [exp] 40 / 0.0002 AT5G06200 201 / 7e-66 Casparian strip membrane domain protein 4, Uncharacterised protein family (UPF0497) (.1) Potri.003G050400 [exp] 39 / 0.001 AT3G16300 137 / 2e-40 Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [flax] [poplar] Marvel-like PF04535 [flax] [poplar] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Lus10034604 pacid=23162811 polypeptide=Lus10034604 locus=Lus10034604.g ID=Lus10034604.BGIv1.0 annot-version=v1.0 ATGGCTCCTATTACAAGGCTGAAGCTGCTTGATTCATCTCTCAGAATCACTTCTATCCCTCTCAGCGTGGCAGCCTTGTGGCTAACTGTGGCCAACCGCC AAGACAACCCTGATCTAGGCCCAGTTGCCTTCAAAAACATCCAAGGCCTCAAATACATGGCTTGGATCAGTGGGATTAGTGCCGCATATGCAGTTATTGC AGCTGTTAGCTCATGGATCAAATGCTTGCCCTCCAGATCCTGGCTCTTCTATCTCTCTGACCAGATTGTAACGTACCTAATGGTAACATCTGGAGCTGGA GTATCGGAGATTATATACTTGCTGTATTTTGGAGACTTGACAGTGGGTTGGAGTGAAGCCTGCCGTTCCTATCCAAACTTCTGCAAAAGAATGGAACTTG CTGTGATACTGCATGCTTTGGCTCTCTTCTGTTTCATTTTTGTAACTCTCATTTCTGCTTATAGAGCCTTTAGCTTGTTTCAGCCTCCTTCCAAGGATAC TACTGCTGTAGAAGATAACAGACCTGCTACTACCTAA
AA sequence Show only first row Show all	>Lus10034604 pacid=23162811 polypeptide=Lus10034604 locus=Lus10034604.g ID=Lus10034604.BGIv1.0 annot-version=v1.0 MAPITRLKLLDSSLRITSIPLSVAALWLTVANRQDNPDLGPVAFKNIQGLKYMAWISGISAAYAVIAAVSSWIKCLPSRSWLFYLSDQIVTYLMVTSGAG VSEIIYLLYFGDLTVGWSEACRSYPNFCKRMELAVILHALALFCFIFVTLISAYRAFSLFQPPSKDTTAVEDNRPATT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54980			Uncharacterised protein family...		Lus10034604 [exp]	0	1
AT3G07360		ATPUB9	ARABIDOPSIS THALIANA PLANT U-B...		Lus10020413 [exp]	2.8	0.8619
AT5G43270	SBP	SPL2	squamosa promoter binding prot...		Lus10021614 [exp]	5.2	0.8793
AT5G67390			unknown protein		Lus10019291 [exp]	8.4	0.8295
AT1G69390		ARC12, ATMINE1	accumulation and replication o...		Lus10036802 [exp]	11.3	0.8394
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Lus10004944 [exp]	16.0	0.7991
AT5G56850			unknown protein		Lus10032679 [exp]	16.1	0.8491
AT4G03400		GH3-10, DFL2	DWARF IN LIGHT 2, Auxin-respon...		Lus10039797 [exp]	17.5	0.8339
AT2G40020			Nucleolar histone methyltransf...		Lus10040211 [exp]	18.6	0.7831
AT3G56140			Protein of unknown function (D...		Lus10017422 [exp]	19.6	0.7946
AT2G06520		PSBX	photosystem II subunit X (.1)		Lus10026458 [exp]	23.3	0.8525

Compare expression of checked genes

Lus10034604 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.