Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60080 413 / 7e-146 3'-5'-exoribonuclease family protein (.1) AT3G12990 79 / 1e-16 RRP45A ribonuclease PH45A (.1.2.3) AT3G60500 79 / 3e-16 G3, CER7 ECERIFERUM 7, 3'-5'-exoribonuclease family protein (.1.2.3) AT3G07750 71 / 1e-13 3'-5'-exoribonuclease family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021789 [exp] 548 / 0 AT1G60080 439 / 7e-157 3'-5'-exoribonuclease family protein (.1) Lus10001173 [exp] 71 / 1e-13 AT3G07750 466 / 6e-168 3'-5'-exoribonuclease family protein (.1.2) Lus10001747 [exp] 66 / 7e-12 AT3G07750 462 / 2e-166 3'-5'-exoribonuclease family protein (.1.2) Lus10009708 [exp] 63 / 8e-11 AT3G60500 476 / 3e-166 ECERIFERUM 7, 3'-5'-exoribonuclease family protein (.1.2.3) Lus10036022 [exp] 59 / 2e-09 AT3G60500 439 / 4e-150 ECERIFERUM 7, 3'-5'-exoribonuclease family protein (.1.2.3) Lus10003036 [exp] 42 / 0.0005 AT3G61620 370 / 9e-131 3'-5'-exoribonuclease family protein (.1.2) Lus10005148 [exp] 41 / 0.001 AT3G61620 376 / 4e-133 3'-5'-exoribonuclease family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G051200 [exp] 479 / 5e-172 AT1G60080 434 / 8e-155 3'-5'-exoribonuclease family protein (.1) Potri.016G055600 [exp] 476 / 5e-171 AT1G60080 442 / 8e-158 3'-5'-exoribonuclease family protein (.1) Potri.009G047500 [exp] 81 / 6e-17 AT3G60500 548 / 0.0 ECERIFERUM 7, 3'-5'-exoribonuclease family protein (.1.2.3) Potri.014G166200 [exp] 77 / 4e-16 AT3G07750 422 / 3e-150 3'-5'-exoribonuclease family protein (.1.2) Potri.001G253200 [exp] 68 / 2e-12 AT3G60500 526 / 0.0 ECERIFERUM 7, 3'-5'-exoribonuclease family protein (.1.2.3) Potri.014G094300 [exp] 41 / 0.0005 AT3G61620 379 / 6e-135 3'-5'-exoribonuclease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [flax] [poplar] S5 PF01138 [flax] [poplar] RNase_PH 3' exoribonuclease family, domain 1
Representative CDS sequence Show only first row Show all	>Lus10034605 pacid=23162698 polypeptide=Lus10034605 locus=Lus10034605.g ID=Lus10034605.BGIv1.0 annot-version=v1.0 ATGGAGTCAGGAGACTTGTCAGCAGAGATGGAAGTGGATGCATTCAGACGTCTATTCCCACTACGCTTCTATGAGCGCCATCTCTCTGAATCTATACGGC CTGATGGTAGGCCACTTGGAAAGGCTAGAGATACTACATTGGCTTTGGGAGCTGTTGCATCTGCTGATGGATCAGCACTAGCGAAGATTGGCTCTACTAC AATGCTGGCTGCTATAAAAATGGAAGTCATGACTCCTTCCACTGACTCACCAGATGAGGGGTCTTTAGCTATTGAGTTCCACATGCCACCAATCTGCTCT CCTATTGTTAGGCCTGGCAGGCCGGCCGAAGCTGCACCTGTTGTGTCCAAGCAATTGTCGGATACGATATTGAGTTCTGGGATGATTAATCTGAAGGAAC TTTCTCTGGTCAGTGGAAAAGCTGCATGGATGGTTTACTTGGACATATATTGTCTAGACGCCGATGGTGCACTTTTTGATGCAGCATTACTTTCAGCTGT GGCTGCATTCTCCCATTCTATGGGAAGAAATAACAAAATTGGAGATTCCTACTTCCCCTCGTTAATGTGTGCATCGGTGCTTCTGTTTCCAGTGCAAATC CCCATAGTTTCCCTGAATGAAAAGGGAAGAATAGTAGTTGTGTCTGAGGAGGGAAATGGAGGGAAGTTGGAGAAAGAAGCTGTAAACAAAGAGAAGAGGA AACTAACACTGAGCAGCATTCCTTTCTCGCTTACATCTGCACTTCATAAGAAGTATATTTCGGCAGATCCGACATCAGAAGAAGAGTCCATCATGGAAAC CCTCGTGACAGTAGTTATGGACTCGTCCGACAGACTCGTCTCCTTCTACAAGCCTGGTGGACCTGCTCTTGCATATACTTCTCTCATCACAGATTGTGTT GCATTGACAAGGCAAAGAATGAAGGAACTTGAGAGTATCCTTGAAGAAGCCATCTCAGGCATGGAAGTTGACTAG
AA sequence Show only first row Show all	>Lus10034605 pacid=23162698 polypeptide=Lus10034605 locus=Lus10034605.g ID=Lus10034605.BGIv1.0 annot-version=v1.0 MESGDLSAEMEVDAFRRLFPLRFYERHLSESIRPDGRPLGKARDTTLALGAVASADGSALAKIGSTTMLAAIKMEVMTPSTDSPDEGSLAIEFHMPPICS PIVRPGRPAEAAPVVSKQLSDTILSSGMINLKELSLVSGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSHSMGRNNKIGDSYFPSLMCASVLLFPVQI PIVSLNEKGRIVVVSEEGNGGKLEKEAVNKEKRKLTLSSIPFSLTSALHKKYISADPTSEEESIMETLVTVVMDSSDRLVSFYKPGGPALAYTSLITDCV ALTRQRMKELESILEEAISGMEVD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60080			3'-5'-exoribonuclease family p...		Lus10034605 [exp]	0	1
AT4G18470		SNI1	SUPPRESSOR OF NPR1-1, INDUCIBL...		Lus10025429 [exp]	3.3	0.8434
AT4G23440			Disease resistance protein (TI...		Lus10032275 [exp]	3.7	0.8324
AT1G72090			Methylthiotransferase (.1)		Lus10016926 [exp]	4.6	0.8238
AT3G13170		ATSPO11-1	Spo11/DNA topoisomerase VI, su...		Lus10004416 [exp]	5.2	0.7813
AT1G60080			3'-5'-exoribonuclease family p...		Lus10021789 [exp]	10.2	0.7904
AT1G77750			Ribosomal protein S13/S18 fami...		Lus10037359 [exp]	12.0	0.7816
AT1G55900		TIM50, EMB1860	embryo defective 1860, Haloaci...		Lus10016610 [exp]	15.0	0.7774
AT3G17030			Nucleic acid-binding proteins ...		Lus10016902 [exp]	16.4	0.8039
AT1G56350			Peptide chain release factor 2...		Lus10010922 [exp]	16.6	0.7101
AT3G10530			Transducin/WD40 repeat-like su...		Lus10035740 [exp]	17.0	0.7904

Compare expression of checked genes

Lus10034605 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.