Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01480 798 / 0 O-fucosyltransferase family protein (.1) AT1G14970 763 / 0 O-fucosyltransferase family protein (.1) AT1G35510 583 / 0 O-fucosyltransferase family protein (.1) AT1G38131 534 / 0 O-fucosyltransferase family protein (.1) AT1G38065 496 / 4e-172 O-fucosyltransferase family protein (.1) AT3G26370 315 / 1e-100 O-fucosyltransferase family protein (.1) AT4G38390 304 / 3e-96 RHS17 root hair specific 17 (.1) AT1G29200 300 / 2e-95 O-fucosyltransferase family protein (.1.2.3) AT4G16650 300 / 8e-95 O-fucosyltransferase family protein (.1) AT4G24530 291 / 1e-91 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021790 [exp] 978 / 0 AT2G01480 838 / 0.0 O-fucosyltransferase family protein (.1) Lus10003715 [exp] 894 / 0 AT2G01480 897 / 0.0 O-fucosyltransferase family protein (.1) Lus10013460 [exp] 892 / 0 AT2G01480 868 / 0.0 O-fucosyltransferase family protein (.1) Lus10009450 [exp] 576 / 0 AT1G35510 816 / 0.0 O-fucosyltransferase family protein (.1) Lus10001545 [exp] 527 / 0 AT1G35510 758 / 0.0 O-fucosyltransferase family protein (.1) Lus10028080 [exp] 471 / 6e-163 AT1G38065 636 / 0.0 O-fucosyltransferase family protein (.1) Lus10025631 [exp] 468 / 6e-161 AT1G38065 635 / 0.0 O-fucosyltransferase family protein (.1) Lus10004729 [exp] 321 / 1e-102 AT4G16650 756 / 0.0 O-fucosyltransferase family protein (.1) Lus10028957 [exp] 318 / 1e-101 AT4G16650 771 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G130600 [exp] 832 / 0 AT2G01480 912 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G111500 [exp] 827 / 0 AT2G01480 906 / 0.0 O-fucosyltransferase family protein (.1) Potri.019G080900 [exp] 600 / 0 AT1G35510 770 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G087300 [exp] 521 / 4e-180 AT1G38131 704 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G173500 [exp] 501 / 1e-172 AT1G38131 697 / 0.0 O-fucosyltransferase family protein (.1) Potri.003G077500 [exp] 323 / 2e-103 AT4G16650 785 / 0.0 O-fucosyltransferase family protein (.1) Potri.001G157400 [exp] 321 / 6e-103 AT4G16650 773 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G048500 [exp] 317 / 2e-101 AT3G26370 893 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G185200 [exp] 315 / 1e-100 AT3G26370 905 / 0.0 O-fucosyltransferase family protein (.1) Potri.011G068300 [exp] 312 / 1e-98 AT1G29200 737 / 0.0 O-fucosyltransferase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10034606 pacid=23162805 polypeptide=Lus10034606 locus=Lus10034606.g ID=Lus10034606.BGIv1.0 annot-version=v1.0 ATGCACGCCCCTAAACGGATCTCTCCCAGCGGTAACACCTCGCCGTCGCCGCCGAATTCCCCAATCCGCTCTCCTCTACCCCGCAGCCGGTCCACATCCG GCCGGTCGGCGAATCAACCGACCCTAGCTCATCGTCTCGCTTGTCTTCTCCTCTCCGTTCTCCTCCGTCGCCAGAGAATTCTCCTGTTCGCTCCGCTCAT CTACATCTCCGGGATGCTTCTGTACATGCGGGCGACGTCGTTCGAGGTCGTCCCCAAGATTTTTCTTACGCCTGCTCCTGGCTCGATTTACAAGAGTCCT CTCGTTTACGAGAAGCTTCGGCCTGAAATGGATGCCGATAATTCTTCTGCTGATGCGCTATTAACTATATGGAAAGATTCTTACAAAAGAGGCGAGTGGA AACCATGTGTGAACCAGTCTTTGGAAGGAATCTTTTCTTCTAATGGTTACATATATGTTGAAGCCAATGGTGGTTTGAATCAACAAAGGACATCGATATG TGATGCCGTTGCTGTTGCAGGCATTCTGAATGCAACACTCCTTGTCCCTACTTTCCATTACCATAGCATCTGGAAAGATCCAAGCAAATTCGAAGACATT TATGATCAAGACTTCTTCTTCACTGCCTTACAGAATGAAGTGAGGGTAGTTGATAAGATTCCAGGATATCTTATGGAGCGTTTTGATCACAACTTCAGCA ATGTATTCAACTTTAGAGTAAAAGCATGGTCACGTATTGAGTATTACAAAGATGTTGTCCTCCCTCGGCTACTGGAAGAAAAAGTTATAAGGATTGCTCC GTTTGCACACCGATTGTCATTTGATGCTCCCCCAGCTGTCCAACGTCTTAGATGTATGGCAAATTATGTAGCTCTAAGGTTCTCAAAACCCATATTAACA ATGGGGGAATATCTCGTAGCTAGAATGAAGGAACTGAGTGCAAGCCACGGTGGGAAATATGTTTCTGTACATCTTCGCTTTGAGGAGGGTGGGTTTTATC AGAAACCTAGTGATGACATGGTTGCTTTCTCTTGTTGTGTGTTTGATGGCGGTGCTCAAGAAGATAGAGACATGAAAGCTGCAAGGGAGAGAGGATGGAG AGGGAAATTTACTAAACCTGGTCGAACTCTACTTCCCGGAGCTATCAGACTTAACGGCAAGTGTCCCCTTTCTCCATTAGAGGTCGGTTTGATGCTGAGG GGAATGGGGTTCACCAAGGATACATACATATATTTAGCTTCTGGAAAGATATACAATGGCGAGAAGTATATGGCTCCATTGTTGGAAATGTTTCCAAATG TGCAGACAAAAGATACACTGGCGACTGAGGAAGAGCTTGCGCCGTTTAAGAATTTCTCTTCCAGGATGGCTGCGATAGACTACACTGTCTGTCTTCACAG TGAAGTGTTTGTGACAACTCAAGGTGGCAACTTCCCCCATTTTCTGTTAGGCCATCGGAGATTCTTGTACAGTGGACATGCCAAGACAATTAAGCCAGAC AAGCGCAAGTTAGCGCTGCTGCTTGATAATACGTCAATAGGGTGGAAGAGTTTCAAAAAGCAAATGTTGAACATGCGGTCTAACAGCGATTCCAAGGGAA GTGAACTCAAGAGACTGAATGACTCGGTATTCTCTCATCCATGTCCCGATTGCATGTGCCGGAACAGCAAAGCAGGCGTCTTGAAACTATCATGA
AA sequence Show only first row Show all	>Lus10034606 pacid=23162805 polypeptide=Lus10034606 locus=Lus10034606.g ID=Lus10034606.BGIv1.0 annot-version=v1.0 MHAPKRISPSGNTSPSPPNSPIRSPLPRSRSTSGRSANQPTLAHRLACLLLSVLLRRQRILLFAPLIYISGMLLYMRATSFEVVPKIFLTPAPGSIYKSP LVYEKLRPEMDADNSSADALLTIWKDSYKRGEWKPCVNQSLEGIFSSNGYIYVEANGGLNQQRTSICDAVAVAGILNATLLVPTFHYHSIWKDPSKFEDI YDQDFFFTALQNEVRVVDKIPGYLMERFDHNFSNVFNFRVKAWSRIEYYKDVVLPRLLEEKVIRIAPFAHRLSFDAPPAVQRLRCMANYVALRFSKPILT MGEYLVARMKELSASHGGKYVSVHLRFEEGGFYQKPSDDMVAFSCCVFDGGAQEDRDMKAARERGWRGKFTKPGRTLLPGAIRLNGKCPLSPLEVGLMLR GMGFTKDTYIYLASGKIYNGEKYMAPLLEMFPNVQTKDTLATEEELAPFKNFSSRMAAIDYTVCLHSEVFVTTQGGNFPHFLLGHRRFLYSGHAKTIKPD KRKLALLLDNTSIGWKSFKKQMLNMRSNSDSKGSELKRLNDSVFSHPCPDCMCRNSKAGVLKLS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01480			O-fucosyltransferase family pr...		Lus10034606 [exp]	0	1
AT5G22780			Adaptor protein complex AP-2, ...		Lus10043363 [exp]	2.0	0.8852
AT2G01480			O-fucosyltransferase family pr...		Lus10021790 [exp]	2.0	0.8786
AT1G69020			Prolyl oligopeptidase family p...		Lus10004631 [exp]	7.7	0.8375
AT3G28430			unknown protein		Lus10011235 [exp]	9.5	0.8537
AT5G19460		ATNUDT20	nudix hydrolase homolog 20 (.1...		Lus10017736 [exp]	13.0	0.8194
AT3G20720			unknown protein		Lus10043072 [exp]	16.5	0.8372
AT3G58560			DNAse I-like superfamily prote...		Lus10016206 [exp]	18.0	0.8680
AT1G05960			ARM repeat superfamily protein...		Lus10001161 [exp]	22.6	0.8196
AT1G05960			ARM repeat superfamily protein...		Lus10006583 [exp]	22.8	0.8479
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Lus10008452 [exp]	24.0	0.8479

Compare expression of checked genes

Lus10034606 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.