Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01630 675 / 0 O-Glycosyl hydrolases family 17 protein (.1.2) AT1G66250 635 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT1G11820 563 / 0 O-Glycosyl hydrolases family 17 protein (.1.2) AT3G13560 462 / 5e-160 O-Glycosyl hydrolases family 17 protein (.1.2.3) AT2G05790 350 / 2e-116 O-Glycosyl hydrolases family 17 protein (.1) AT5G55180 345 / 6e-115 O-Glycosyl hydrolases family 17 protein (.1.2) AT4G26830 340 / 4e-113 O-Glycosyl hydrolases family 17 protein (.1) AT5G56590 341 / 2e-112 O-Glycosyl hydrolases family 17 protein (.1) AT4G29360 341 / 4e-112 O-Glycosyl hydrolases family 17 protein (.1.2) AT5G24318 303 / 1e-98 O-Glycosyl hydrolases family 17 protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013465 [exp] 800 / 0 AT2G01630 745 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10007929 [exp] 782 / 0 AT2G01630 730 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10002295 [exp] 674 / 0 AT1G66250 753 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10004044 [exp] 669 / 0 AT1G66250 752 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10031456 [exp] 533 / 0 AT1G11820 796 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10039179 [exp] 479 / 2e-166 AT3G13560 634 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Lus10013758 [exp] 462 / 1e-160 AT3G13560 595 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Lus10015151 [exp] 350 / 3e-116 AT2G05790 731 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10032562 [exp] 342 / 2e-113 AT5G55180 642 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G108500 [exp] 750 / 0 AT2G01630 708 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.008G133200 [exp] 732 / 0 AT2G01630 721 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.004G086400 [exp] 698 / 0 AT1G66250 741 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.017G130200 [exp] 694 / 0 AT1G66250 731 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.011G006100 [exp] 561 / 0 AT1G11820 805 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.004G010500 [exp] 551 / 0 AT1G11820 794 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.003G218500 [exp] 460 / 3e-159 AT3G13560 594 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Potri.001G006500 [exp] 454 / 8e-157 AT3G13560 632 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Potri.018G068600 [exp] 348 / 2e-115 AT5G56590 685 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.011G094400 [exp] 346 / 8e-115 AT5G55180 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [flax] [poplar] PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10034607 pacid=23162901 polypeptide=Lus10034607 locus=Lus10034607.g ID=Lus10034607.BGIv1.0 annot-version=v1.0 ATGCCAAGTCCACCTCAAGTAGTGGCTCTTCTCAAGGCTCAAAACATTAGACATGTCAGGCTCTACGATGCAGACCGGGATATGCTGGCAGCACTTGCCA ATTCAGGAATCCATGTCACAATTTCCGTACCTGATGACCAGCTCCTCGGCATAGGCCAATCAAACGCTACAGCAGCCAACTGGGTTGCTCGTAATGTAAT ATCGCATGTCCCTACTACAAATATTACAGCCATAGCAGTTGGATCTGAGGTCCTTACAAGTCTTCCAAATGCAGCTCCGGTTCTAGTCTCTGCCTTAAAC TTCATCCATTCGGCCCTTGTTGCAGCTAATCTCGACAGTCGAATCAAAGTATCCACCCCGCATTCATCTTCCATCATCCTCGATTCTTTCCCTCCCTCTC AGGCCTTCTTTAACAGAACATGGAACCCGGTAATGGTTCCTCTGCTGAAGTTTCTGCAGTCCACGGGATCGTACCTTATGTTGAATGTGTATCCATACTA TGATTACATTCAAGCGAACGGCGTAATCCCATTGGACTATGCCCTTTTCCGTCCCCTCCGACCAAATAAAGAAGCTGTGGATTCCAACACCCTTCTCCAT TACACTAATGTGTTTGATGCTCTAGTTGATGCAGCATATGCTGCAATGTCAGCATTGAACTTCACCGATATCCCCGTGGTTGTCACCGAGACAGGTTGGC CTTCCAAAGGAGATTCCTCGGAGCAAGATGCCACAACAGATAATGCCAACACATACAACAGTAACTTGATTAAGCACGTGCTTAACAACACTGGCACTCC CAAACATCCTGGGATTGCAGTGAGCACCTACATATACGAGCTTTACAACGAGGACTTGGCGACCGGGACACCATCTGAAAAGAACTGGGGGCTCTTTGAT GCCAATGGAATTCCGGTCTACATCTTACATTTGACAGGCGCTGGTACCGTGTTGGCGAATGATTCTACGAATCAGACATTCTGTGTGGCAAAGGAACGTT CTGATCGGAAGCAGCTCCAGGCAGCACTAGACTGGGCTTGTGGACCGGGGAGAGTTGATTGCTCGCCTATGTTGAAAGGGGAACCATGTTACGAGCCAGA TAACGTGATTGCTCATGCCACATTTGCTTTCAATTCCTACTATCAACGGATGGCCAAGTCTCCCGGGTCATGCGACTTTAAAGGGGTGGCTGCTATTACC ACTACAGACCCAAGTCATGGACCATGTATAGTCCCGGGAAGTGTCGGAAAGCATGGAACCTTAACGAATACAACATTACTGGCGCCATCATCGAACTCCA CGAGTAATTCCGGCTCTCCTGTACCATACTCTTTCTATGCTGGAGTTTCTTCTTTCTCAGCTTCTGTGACGATGTGCATTTTGTTGGTGTGCATGGTGTT TTAG
AA sequence Show only first row Show all	>Lus10034607 pacid=23162901 polypeptide=Lus10034607 locus=Lus10034607.g ID=Lus10034607.BGIv1.0 annot-version=v1.0 MPSPPQVVALLKAQNIRHVRLYDADRDMLAALANSGIHVTISVPDDQLLGIGQSNATAANWVARNVISHVPTTNITAIAVGSEVLTSLPNAAPVLVSALN FIHSALVAANLDSRIKVSTPHSSSIILDSFPPSQAFFNRTWNPVMVPLLKFLQSTGSYLMLNVYPYYDYIQANGVIPLDYALFRPLRPNKEAVDSNTLLH YTNVFDALVDAAYAAMSALNFTDIPVVVTETGWPSKGDSSEQDATTDNANTYNSNLIKHVLNNTGTPKHPGIAVSTYIYELYNEDLATGTPSEKNWGLFD ANGIPVYILHLTGAGTVLANDSTNQTFCVAKERSDRKQLQAALDWACGPGRVDCSPMLKGEPCYEPDNVIAHATFAFNSYYQRMAKSPGSCDFKGVAAIT TTDPSHGPCIVPGSVGKHGTLTNTTLLAPSSNSTSNSGSPVPYSFYAGVSSFSASVTMCILLVCMVF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01630			O-Glycosyl hydrolases family 1...		Lus10034607 [exp]	0	1
AT3G09070			Protein of unknown function (D...		Lus10035513 [exp]	2.4	0.8751
AT3G19540			Protein of unknown function (D...		Lus10024790 [exp]	4.5	0.8612
AT1G61170			unknown protein		Lus10018461 [exp]	7.1	0.8628
AT1G11120			unknown protein		Lus10018564 [exp]	9.8	0.8627
AT5G19680			Leucine-rich repeat (LRR) fami...		Lus10012715 [exp]	9.9	0.8194
AT5G25510			Protein phosphatase 2A regulat...		Lus10008104 [exp]	10.4	0.8464
AT3G26400		EIF4B1	eukaryotic translation initiat...		Lus10036874 [exp]	14.4	0.8238
AT2G01710			Chaperone DnaJ-domain superfam...		Lus10009275 [exp]	14.4	0.8044
AT5G44500			Small nuclear ribonucleoprotei...		Lus10038421 [exp]	16.0	0.8584
AT4G32330			TPX2 (targeting protein for Xk...		Lus10002915 [exp]	16.2	0.8297

Compare expression of checked genes

Lus10034607 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.