Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01600 727 / 0 ENTH/ANTH/VHS superfamily protein (.1) AT1G14910 684 / 0 ENTH/ANTH/VHS superfamily protein (.1) AT4G25940 514 / 4e-177 ENTH/ANTH/VHS superfamily protein (.1) AT5G57200 486 / 4e-166 ENTH/ANTH/VHS superfamily protein (.1) AT5G35200 433 / 4e-146 ENTH/ANTH/VHS superfamily protein (.1) AT1G03050 223 / 1e-64 ENTH/ANTH/VHS superfamily protein (.1) AT4G02650 216 / 2e-62 ENTH/ANTH/VHS superfamily protein (.1) AT1G05020 183 / 5e-50 ENTH/ANTH/VHS superfamily protein (.1) AT2G25430 147 / 2e-37 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) AT4G32285 144 / 3e-36 ENTH/ANTH/VHS superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021796 [exp] 1031 / 0 AT2G01600 756 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10013469 [exp] 850 / 0 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10007933 [exp] 844 / 0 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10025462 [exp] 543 / 0 AT4G25940 685 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10005184 [exp] 449 / 4e-152 AT5G35200 702 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10038122 [exp] 448 / 6e-152 AT5G35200 714 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10003642 [exp] 320 / 1e-102 AT5G35200 380 / 2e-126 ENTH/ANTH/VHS superfamily protein (.1) Lus10015335 [exp] 285 / 1e-87 AT4G25940 385 / 6e-126 ENTH/ANTH/VHS superfamily protein (.1) Lus10001502 [exp] 215 / 2e-61 AT2G25430 914 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G132100 [exp] 838 / 0 AT2G01600 749 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.010G110000 [exp] 827 / 0 AT2G01600 732 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.018G142800 [exp] 575 / 0 AT5G57200 655 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G075800 [exp] 552 / 0 AT2G01600 543 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.018G125284 [exp] 452 / 1e-153 AT5G35200 646 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.T125107 [exp] 452 / 2e-153 AT5G35200 644 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G065100 [exp] 433 / 5e-146 AT5G35200 621 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.T124907 [exp] 246 / 1e-77 AT5G35200 357 / 4e-122 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G118100 [exp] 241 / 7e-72 AT1G03050 605 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.018G128200 [exp] 202 / 6e-57 AT4G32285 626 / 0.0 ENTH/ANTH/VHS superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0009 [flax] [poplar] ENTH_VHS PF07651 [flax] [poplar] ANTH ANTH domain
Representative CDS sequence Show only first row Show all	>Lus10034610 pacid=23162725 polypeptide=Lus10034610 locus=Lus10034610.g ID=Lus10034610.BGIv1.0 annot-version=v1.0 ATGGGAACGCTTCAAACATGGAGGAAAGCCTATGGCGCTCTCAAAGACTCCACCAAAGTCGGCCTCGCTCATGTCAATAGCGATTACGCGGACCTGGACG TGGCAATTGTCAAAGCAACGAATCATGTCGAGTGCCCTCCCAAAGAAAGAAATGTCAGGAAAATCTTGTTTGCAACTCAAGCCATTCGTCCTAGAGCTGA TGTTGCTTACTGTATCCACGCTCTTTCACGGCGTTTGACCAAGACGCATAACTGGACGGTGGCACTGAAAACGCTGATCGTCATACATAGACTTCTAAGG GAAGGTGACCCGACTCTGAGAGAAGAACTACTGAATTACTCGCAAAGAGGGCGCATTCTCCAACTTTCCAATTTCAAGGACGATTCTAGTCCTATTGCAT GGGATTGCTCTGCTTGGGTACGTACGTACGCATTGTTTTTGGAGGAGCGTCTTGAATGTTTTAGAGTTTTGAAGTATGACATCGAAGCAGAGCGTCTCTC GAAACCCGCTCAGGGGGATGACAAGGGTTACAGCAGAACCAGAGACTTGGCTAGTGAAGAGCTACTGGAGCAACTTCCTTTTTTACAACAGCTGATGTAC CGTCTTGTTGGTTGCCGGCCAGAAGGTGCAGCTGTCAGAAATTATGTAATTCAGTATGCTCTTGCTCTGGTGTTGAAAGAGAGCTTTAAAGTATATTGCG CTATCAATGATGGAATCATCAACCTTGTCGATAAGTTTTTTGAAATGCCAAGGCATGAAGCTATCAAAGCTCTTGATGTCTACAAACGAGCTGGTCAGCA GGCTGCTACTCTTTCCGAGTTCTACGAAGTGTGCAAAGGATTGGAACTTGCTAGAAACTTTCAGTTTCCTACCTTGAGAGAGCCTCCACAATTTTTTCTA ACAACCATGGAAGAGTACATACAAGAGGCACCTCGAGTCGTTTCTGTTCCAAACGAACCATTGCTCCAGTTGACGTACAGACCAGAAGAAAGTCCTTCTG AGGATGCCAAACCAAGTGATGAGCCCGAACAACTTCCTGCGGATGTTATTGATGCTACACACGTAGAGGTTTCTCAGCCTCCTCCTGCCCCGACGTCACC TGTTGCTCCACAGAACGGCAGCATGGATACAGGAGATCTCTTGGGTTTGAGCAGTGATGCATCTCCACATGCATCTGCAATAGACGAACAAAATGCATTG GCTTTAGCTATTGTTCTGTCCGAAGCAGATGCTACACCAACATTTAATTCTGGTTCTGTTCAACCCCAAGATTTTGAAGCCAGCGGATGGGAACTTGCCC TGGTTACTGCTCCTAGCAGCGACATCTCATCAGTAAATGAGAGGCAGTTGGGTGGTGGATTAGACACTCTAACCCTGAACAGCCTATACGACGATGGTGC TTATAGAGCAGCCCAGAAGCCAGTCTATGGAGCACCAGCACCGAACCCATTCGAAGTACATGACCCGTTTGCTCTGTCGACCAGTGTTGCTCTTCCACAG TCTGTACAAATGGAAGCGATGGCTCAACAGCAACAGCCAGTCAACAACCCCTTTGGTCCGTACCACTCCCCTTTTATGCCGCAGCAGCAGCAGCAGCCAT CAGAGGGACTGCAACCTCCTCAACCGCCACAGCTGATGGCGAGCGCTCATAATCCTTTTGGCGACGATGTGGCCTTCAGTGCTGCCGGATTTACGGCTAA TTCCCTCGATGATCATCCTCCTCCTCAGGCTCACGGCAACAATCCTTTTGGAAGTACAGGTCTATTGTGA
AA sequence Show only first row Show all	>Lus10034610 pacid=23162725 polypeptide=Lus10034610 locus=Lus10034610.g ID=Lus10034610.BGIv1.0 annot-version=v1.0 MGTLQTWRKAYGALKDSTKVGLAHVNSDYADLDVAIVKATNHVECPPKERNVRKILFATQAIRPRADVAYCIHALSRRLTKTHNWTVALKTLIVIHRLLR EGDPTLREELLNYSQRGRILQLSNFKDDSSPIAWDCSAWVRTYALFLEERLECFRVLKYDIEAERLSKPAQGDDKGYSRTRDLASEELLEQLPFLQQLMY RLVGCRPEGAAVRNYVIQYALALVLKESFKVYCAINDGIINLVDKFFEMPRHEAIKALDVYKRAGQQAATLSEFYEVCKGLELARNFQFPTLREPPQFFL TTMEEYIQEAPRVVSVPNEPLLQLTYRPEESPSEDAKPSDEPEQLPADVIDATHVEVSQPPPAPTSPVAPQNGSMDTGDLLGLSSDASPHASAIDEQNAL ALAIVLSEADATPTFNSGSVQPQDFEASGWELALVTAPSSDISSVNERQLGGGLDTLTLNSLYDDGAYRAAQKPVYGAPAPNPFEVHDPFALSTSVALPQ SVQMEAMAQQQQPVNNPFGPYHSPFMPQQQQQPSEGLQPPQPPQLMASAHNPFGDDVAFSAAGFTANSLDDHPPPQAHGNNPFGSTGLL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01600			ENTH/ANTH/VHS superfamily prot...		Lus10034610 [exp]	0	1
AT2G01600			ENTH/ANTH/VHS superfamily prot...		Lus10021796 [exp]	2.8	0.8614
AT2G43160			ENTH/VHS family protein (.1.2....		Lus10025527 [exp]	3.0	0.8804
AT1G14830		DRP1C, ADL5, AD...	DYNAMIN RELATED PROTEIN 1C, AR...		Lus10029001 [exp]	3.3	0.8910
AT5G51430		EYE	EMBRYO YELLOW, conserved oligo...		Lus10031155 [exp]	4.2	0.8820
AT2G43160			ENTH/VHS family protein (.1.2....		Lus10019571 [exp]	6.9	0.8454
AT5G24710			Transducin/WD40 repeat-like su...		Lus10040564 [exp]	8.2	0.8726
AT5G03340			ATPase, AAA-type, CDC48 protei...		Lus10021442 [exp]	13.4	0.8596
AT2G16405			Transducin/WD40 repeat-like su...		Lus10028800 [exp]	13.5	0.8361
AT1G15130			Endosomal targeting BRO1-like ...		Lus10034634 [exp]	14.1	0.8440
AT1G67930			Golgi transport complex protei...		Lus10007329 [exp]	14.3	0.8684

Compare expression of checked genes

Lus10034610 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.