Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23260 254 / 1e-87 MMZ1 ,UEV1A UBIQUITIN E2 VARIANT 1A, MMS ZWEI homologue 1 (.1) AT1G70660 250 / 3e-86 MMZ2 ,UEV1B UBIQUITIN E2 VARIANT 1B, MMS ZWEI homologue 2 (.1.2) AT1G70650 245 / 9e-79 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) AT3G52560 224 / 3e-76 MMZ4 ,UEV1D ,UEV1D-4 MMS2 ZWEI HOMOLOGUE 4, ubiquitin E2 variant 1D-4 (.1.2.3.4) AT2G36060 218 / 9e-74 MMZ3 ,UEV1C UBIQUITIN E2 VARIANT 1C, MMS ZWEI homologue 3 (.1.2.3) AT1G50490 51 / 3e-08 UBC20 ubiquitin-conjugating enzyme 20 (.1) AT3G20060 48 / 2e-07 UBC19 ubiquitin-conjugating enzyme19 (.1.2) AT3G46460 45 / 3e-06 UBC13 ubiquitin-conjugating enzyme 13 (.1) AT5G25760 45 / 3e-06 PEX4, UBC21 ubiquitin-conjugating enzyme 21, peroxin4 (.1.2) AT3G13550 45 / 4e-06 EMB144, COP10, CIN4, FUS9 FUSCA 9, EMBRYO DEFECTIVE 144, CONSTITUTIVE PHOTOMORPHOGENIC 10, CYTOKININ-INSENSITIVE 4, Ubiquitin-conjugating enzyme family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021797 [exp] 296 / 3e-104 AT1G23260 268 / 3e-93 UBIQUITIN E2 VARIANT 1A, MMS ZWEI homologue 1 (.1) Lus10029415 [exp] 223 / 1e-75 AT3G52560 290 / 7e-103 MMS2 ZWEI HOMOLOGUE 4, ubiquitin E2 variant 1D-4 (.1.2.3.4) Lus10004211 [exp] 216 / 8e-73 AT2G36060 273 / 8e-96 UBIQUITIN E2 VARIANT 1C, MMS ZWEI homologue 3 (.1.2.3) Lus10016573 [exp] 49 / 1e-07 AT5G59300 291 / 6e-102 ARABIDOPSIS THALIANA UBIQUITIN CARRIER PROTEIN 7, ubiquitin carrier protein 7 (.1) Lus10019034 [exp] 49 / 2e-07 AT3G20060 292 / 1e-102 ubiquitin-conjugating enzyme19 (.1.2) Lus10005014 [exp] 49 / 2e-07 AT3G20060 292 / 1e-102 ubiquitin-conjugating enzyme19 (.1.2) Lus10040844 [exp] 49 / 2e-07 AT5G59300 290 / 1e-101 ARABIDOPSIS THALIANA UBIQUITIN CARRIER PROTEIN 7, ubiquitin carrier protein 7 (.1) Lus10009495 [exp] 44 / 2e-05 AT5G25760 273 / 1e-93 ubiquitin-conjugating enzyme 21, peroxin4 (.1.2) Lus10027570 [exp] 42 / 7e-05 AT1G64230 303 / 8e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G107700 [exp] 274 / 1e-95 AT1G23260 269 / 5e-94 UBIQUITIN E2 VARIANT 1A, MMS ZWEI homologue 1 (.1) Potri.008G133900 [exp] 262 / 4e-91 AT1G23260 258 / 1e-89 UBIQUITIN E2 VARIANT 1A, MMS ZWEI homologue 1 (.1) Potri.016G073100 [exp] 222 / 2e-75 AT3G52560 281 / 5e-99 MMS2 ZWEI HOMOLOGUE 4, ubiquitin E2 variant 1D-4 (.1.2.3.4) Potri.006G205700 [exp] 221 / 7e-75 AT3G52560 275 / 7e-97 MMS2 ZWEI HOMOLOGUE 4, ubiquitin E2 variant 1D-4 (.1.2.3.4) Potri.009G049600 [exp] 53 / 7e-09 AT3G20060 296 / 3e-104 ubiquitin-conjugating enzyme19 (.1.2) Potri.001G254500 [exp] 52 / 2e-08 AT3G20060 295 / 1e-103 ubiquitin-conjugating enzyme19 (.1.2) Potri.010G206832 [exp] 49 / 1e-07 AT3G46460 263 / 3e-91 ubiquitin-conjugating enzyme 13 (.1) Potri.010G206766 [exp] 47 / 6e-07 AT3G46460 261 / 2e-90 ubiquitin-conjugating enzyme 13 (.1) Potri.008G053900 [exp] 46 / 1e-06 AT3G55380 287 / 7e-101 ubiquitin-conjugating enzyme 14 (.1.2) Potri.008G053800 [exp] 46 / 1e-06 AT5G59300 264 / 4e-91 ARABIDOPSIS THALIANA UBIQUITIN CARRIER PROTEIN 7, ubiquitin carrier protein 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [flax] [poplar] UBC PF00179 [flax] [poplar] UQ_con Ubiquitin-conjugating enzyme
Representative CDS sequence Show only first row Show all	>Lus10034611 pacid=23162699 polypeptide=Lus10034611 locus=Lus10034611.g ID=Lus10034611.BGIv1.0 annot-version=v1.0 ATGAGCTCCGAAGCATCAAATGTTGTTGTGCCAAGGAGTTTCAGACTCCTGGAAGAGCTTGAAAGAGGTGAAAAGGGCATTGGAGATGGAACTGTTAGCT ATGGAATGGACGATGCTGATGATATCTTGATGCAGTCTTGGACTGGAACTATAATTGGTCCTCCTCATACTGTTCACGAAGGGCGCATCTACCAGTTGAA GCTCTTCTGTGGCAATGATTATCCGGAAAATCCACCAAGCGTGAAGTTTCAAAGCCGTGTAAACATGACTTGCGTCAATCCTGAAACAGGAGTTGTCGAA CCAAATCTCTTCCCCATGCTTGCTAATTGGCACAGAGAATACACAATGGAGGATATATTGGTTCAATTGAAGAAAGAAATGATGTCATCACACAACCGGA AGCTCGCTCAGCCTCCTGAAGTGCCATTAGCCCTGCTGGTTGATCTCCGGAGAGGTTATGGAAACAATGGGAATGATGAAGGGAGGATTGACCACAAGGG ATTGGTGTTGAAGTGCTGTATTCTATGA
AA sequence Show only first row Show all	>Lus10034611 pacid=23162699 polypeptide=Lus10034611 locus=Lus10034611.g ID=Lus10034611.BGIv1.0 annot-version=v1.0 MSSEASNVVVPRSFRLLEELERGEKGIGDGTVSYGMDDADDILMQSWTGTIIGPPHTVHEGRIYQLKLFCGNDYPENPPSVKFQSRVNMTCVNPETGVVE PNLFPMLANWHREYTMEDILVQLKKEMMSSHNRKLAQPPEVPLALLVDLRRGYGNNGNDEGRIDHKGLVLKCCIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23260		MMZ1 ,UEV1A	UBIQUITIN E2 VARIANT 1A, MMS Z...		Lus10034611 [exp]	0	1
AT3G27210			unknown protein		Lus10035217 [exp]	7.3	0.7903
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Lus10020979 [exp]	13.6	0.7058
AT4G29210		GGT4, GGT3	gamma-glutamyl transpeptidase ...		Lus10012925 [exp]	27.9	0.6801
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10032218 [exp]	39.4	0.7036
AT2G21540		ATSFH3	SEC14-like 3 (.1.2.3)		Lus10042303 [exp]	46.5	0.7015
AT3G02100			UDP-Glycosyltransferase superf...		Lus10003453 [exp]	54.4	0.6960
AT4G35410			Clathrin adaptor complex small...		Lus10003641 [exp]	63.2	0.6874
AT3G25220		FKBP15-1	FK506-binding protein 15 kD-1 ...		Lus10002339 [exp]	92.9	0.6549
AT4G32000			Protein kinase superfamily pro...		Lus10001939 [exp]	128.4	0.6327
AT1G01750		ADF11	actin depolymerizing factor 11...		Lus10001486 [exp]	134.3	0.5891

Compare expression of checked genes

Lus10034611 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.