Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01650 504 / 4e-177 PUX2 plant UBX domain-containing protein 2 (.1) AT1G04850 51 / 8e-07 ubiquitin-associated (UBA)/TS-N domain-containing protein (.1) AT5G35690 50 / 4e-06 unknown protein AT5G48690 45 / 8e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021798 [exp] 739 / 0 AT2G01650 532 / 0.0 plant UBX domain-containing protein 2 (.1) Lus10037827 [exp] 49 / 7e-06 AT1G04850 590 / 0.0 ubiquitin-associated (UBA)/TS-N domain-containing protein (.1) Lus10017103 [exp] 49 / 7e-06 AT1G04850 573 / 0.0 ubiquitin-associated (UBA)/TS-N domain-containing protein (.1) Lus10002262 [exp] 44 / 0.0003 AT5G35690 585 / 0.0 unknown protein Lus10038183 [exp] 43 / 0.0006 AT3G07140 777 / 0.0 GPI transamidase component Gpi16 subunit family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G133700 [exp] 539 / 0 AT2G01650 497 / 4e-174 plant UBX domain-containing protein 2 (.1) Potri.002G244500 [exp] 50 / 2e-06 AT1G04850 311 / 1e-104 ubiquitin-associated (UBA)/TS-N domain-containing protein (.1) Potri.001G316400 [exp] 45 / 5e-05 AT1G04850 581 / 0.0 ubiquitin-associated (UBA)/TS-N domain-containing protein (.1) Potri.001G264500 [exp] 44 / 0.0001 AT3G27310 237 / 1e-78 plant UBX domain-containing protein 1 (.1) Potri.014G160400 [exp] 44 / 0.0002 AT5G35690 440 / 2e-146 unknown protein Potri.017G056900 [exp] 44 / 0.0002 AT1G04850 577 / 0.0 ubiquitin-associated (UBA)/TS-N domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00789 [flax] [poplar] UBX UBX domain CL0072 [flax] [poplar] PF09409 [flax] [poplar] PUB PUB domain
Representative CDS sequence Show only first row Show all	>Lus10034612 pacid=23162754 polypeptide=Lus10034612 locus=Lus10034612.g ID=Lus10034612.BGIv1.0 annot-version=v1.0 ATGGATGATATGAAAGACAAGTTCAAGGGATTCGTGAAGAAAGTGAATACCCAGTTGTCATCTTCCTCCTCCTCCGGTAAATTCAAAGGCCAAGGTCGAG TTCTTGGCACTAATTCTTCTTCTTCTTCTTCCTCCTCCGATTCTTCTAATTCAGTCTACGCTCGTTTTTCTCAACCTGTTAATCCGAAACCCACTTCCAA CCCTTCTTCTAATTCCAATTCCAAACCGTCGCCTCCGAAGAGATCAGCTCCGACTTCTTCCTCAGCCCCAATTCCCAAGCCCGCTAATGGGTTCGACGCT TTTGGTCCTTTGATAACGAGCAGTGAAAGATCCAAGAATGGATATTCACTGAATGTGTTTGAATGCCCGATTTGTGGGCAAGCCTATAGATCGGAGGAGG ATGTATCTGCTCACGTCGAGAGCTGCGTGACTGAAGGTGTCAGAGTTGTTGATGTCACTTCCGGCGGTGGTGATGACAACATCAATGCTGTTTCTGATGG TAAAATTGATGAAGAAGCAAGTTTTTTGGATGAGAGCTCTGTTGCTGCCTATTTGTCTGGGAAGCCGCCGGAGGGTTCTGTGGAGGTTGTGCTGAGATTA TTTAGGAACATTGTTAAGGACCCTGAGAATGTCAAGTTTAGGAGAGTCAGAATGGGGAACCCTAAGATTAGGGAAGCAGTGACTGATGTTGCTGGAGGGG TAGAGTTGTTGGAGCTTGCCGGGTTTGAGCTCAAGGAAGAAGGTGGAGAGATGTGGGCTCTGATGGAAGATGTTCCTGGGAAAGAAAGGATTGGTTTGAT CAGTAAGGTGATAGGATTCCTGGAACCTAGGAAGGTAGAGAATATAAAAGCATCTGTAGTTCCAGTGGAGGAAGATCAGCCGGCTGAGCGAAAGAAGATT GACAGACAGATCAAGGTGTTCTTTGCTGTTTCTGAAAACGTAGCATCAAAAATTGAGGTGCCAGACTCGTTCTACAATCTGTCCGCCATCGAGCTAAAAA GCGAAGCAGATATGAGAAAGAAGAAGCTCGCTGAATCCCAGCTTCTGATTCCCAGGTCATTTAGGGAAAAGCAGGCCAAAGCTGCCCGGAAGAAATACAC CAGGACTATAGTTCGCATCCAATTTCCTGATGGAGTGGTTCTTCAAGGTGTATTTGCTCCTTGGGAGCCAACCACTGCCCTGTATGAGTTTGTTGGCTCG GCGCTTAAAGATAGCAGCTTGGAGTTCGAGCTCATGCATCCAGTGATCGTGAAACGCCGGGTGATCCCACATTCTGCAGCGGCAGGAGGGAGAAGTATAA CCCTGGATGATGAAGATTTAGTCCCTTCAGCTCTCATCAAGTTCAAACCTATTGAAACAGATTCATCTGTGTTCACCGGGTTATCTAACGAGCTCCTGGA GATCAGCGAACCACTGACATGA
AA sequence Show only first row Show all	>Lus10034612 pacid=23162754 polypeptide=Lus10034612 locus=Lus10034612.g ID=Lus10034612.BGIv1.0 annot-version=v1.0 MDDMKDKFKGFVKKVNTQLSSSSSSGKFKGQGRVLGTNSSSSSSSSDSSNSVYARFSQPVNPKPTSNPSSNSNSKPSPPKRSAPTSSSAPIPKPANGFDA FGPLITSSERSKNGYSLNVFECPICGQAYRSEEDVSAHVESCVTEGVRVVDVTSGGGDDNINAVSDGKIDEEASFLDESSVAAYLSGKPPEGSVEVVLRL FRNIVKDPENVKFRRVRMGNPKIREAVTDVAGGVELLELAGFELKEEGGEMWALMEDVPGKERIGLISKVIGFLEPRKVENIKASVVPVEEDQPAERKKI DRQIKVFFAVSENVASKIEVPDSFYNLSAIELKSEADMRKKKLAESQLLIPRSFREKQAKAARKKYTRTIVRIQFPDGVVLQGVFAPWEPTTALYEFVGS ALKDSSLEFELMHPVIVKRRVIPHSAAAGGRSITLDDEDLVPSALIKFKPIETDSSVFTGLSNELLEISEPLT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01650		PUX2	plant UBX domain-containing pr...		Lus10034612 [exp]	0	1
AT1G53750		RPT1A	regulatory particle triple-A 1...		Lus10031815 [exp]	1.4	0.8455
AT1G32400		TOM2A	tobamovirus multiplication 2A ...		Lus10011042 [exp]	2.4	0.8646
AT3G12920		BRG3	BOI-related gene 3, SBP (S-rib...		Lus10031202 [exp]	3.5	0.8228
AT5G17190			unknown protein		Lus10034347 [exp]	4.2	0.7956
AT1G32400		TOM2A	tobamovirus multiplication 2A ...		Lus10003011 [exp]	6.0	0.8339
AT1G78300		14-3-3OMEGA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10010349 [exp]	6.3	0.7940
AT2G38020		EMB258, MAN, VC...	VACUOLELESS 1, MANGLED, vacuol...		Lus10012203 [exp]	8.8	0.7902
AT1G80400			RING/U-box superfamily protein...		Lus10011475 [exp]	9.5	0.8162
AT5G17190			unknown protein		Lus10031957 [exp]	9.7	0.8222
AT5G51670			Protein of unknown function (D...		Lus10031110 [exp]	11.6	0.7598

Compare expression of checked genes

Lus10034612 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.