Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71150 370 / 1e-127 unknown protein AT1G22970 359 / 2e-123 unknown protein AT1G22980 254 / 2e-82 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021799 [exp] 668 / 0 AT1G71150 363 / 5e-125 unknown protein Lus10007946 [exp] 197 / 3e-62 AT1G71150 144 / 4e-42 unknown protein Lus10007947 [exp] 145 / 4e-43 AT1G71150 102 / 3e-27 unknown protein Lus10013482 [exp] 86 / 2e-18 AT2G01110 441 / 2e-154 unfertilized embryo sac 3, TWIN-ARGININE TRANSLOCATION C, ALBINO AND PALE GREEN 2, Sec-independent periplasmic protein translocase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G126400 [exp] 489 / 1e-174 AT1G22970 363 / 7e-125 unknown protein Potri.010G117100 [exp] 374 / 4e-129 AT1G22970 283 / 2e-93 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034613 pacid=23162905 polypeptide=Lus10034613 locus=Lus10034613.g ID=Lus10034613.BGIv1.0 annot-version=v1.0 ATGGGGAGAAAGGAGAAAGAGCAGCTCAATCAAGTGCTAAATTCGCACCTTAACACCATCCACGACACCTTACAGGTTTTGGATCAAACACCAGCTTCGT CTTTGGAAAAAGTTAGCTGGGATGACGTTCTGAAAATGGGAGATCAAGTCTACAGGCAAGCTACTATTGTTGGGATGCTTTGGACGGGAGAAAGGCTCGA AGATAAAGCGATTGAGGAGAACATGGCGACTTATTTCAATACGCTGCAAGGGTTCCTTCTACTTTCTCATGGAAGTAGAGTTGGAGCAGGGGCTACTCTT TCGACGAGTATCTATGCATCTGCAAAGCAAGTTGTTGATTGCAGTTTTAAGTTGATGAGTGAGACTGTTGCTTCATATGGATCCCGTAACAAAGACCTGA AGCTATTAGTACCACAGCTGGTTGGTGCAGTATGGGAAGCATGTACTGCGGTGAAGAAGACACCTTCAACTAATACTACAGCTATTGGCCGAGCAATGAC AAGAGTTGCAGTTTCAATGAAAGATGTTCTCCGCGAGATGAATGAACTAAAGCCCGAGTCTCCAGATCCCACTGTCTCTGATGGTGCAGTTGCTGAAGGT GGTACCTTCAGTGACGACGATGATCTTGGTAACGACTTGTCACCTGAAGACATGAAAGTTGCTGAATTGGCAACTGAGGTCGTGTCTCAGGCCCTTGTAT TCATAAAGGAACTAGTCCGCACCATCTCTGGATTGATTAAGCTGGAAAAACCTAACGACAGTGGCAGCTTTGTGGATACATTAGAAAAGTTACTAAAACT GTGCCAGGGGATCGGAGAGCAGATTGATGAATTGGGAGCCTGTCTTTACCCTCCACAGGAGTTCCCCGCCATGAAGACTGCTTTGGATAAGATATCGAAC AAGGTTGACGAAGCGAGGATATGCGTGGAAAGTTTGAACTGCTCTGCAGAATCTTTCTTCCAGGGATGTACTAGTTTGAAGAGTTCAATAAAACTAATGG AGACAGAACTAGATTTCTCCATGACCACTGATTTAGGTGATAGATTGCAGAATGTCAGTTTGAACCAGTAA
AA sequence Show only first row Show all	>Lus10034613 pacid=23162905 polypeptide=Lus10034613 locus=Lus10034613.g ID=Lus10034613.BGIv1.0 annot-version=v1.0 MGRKEKEQLNQVLNSHLNTIHDTLQVLDQTPASSLEKVSWDDVLKMGDQVYRQATIVGMLWTGERLEDKAIEENMATYFNTLQGFLLLSHGSRVGAGATL STSIYASAKQVVDCSFKLMSETVASYGSRNKDLKLLVPQLVGAVWEACTAVKKTPSTNTTAIGRAMTRVAVSMKDVLREMNELKPESPDPTVSDGAVAEG GTFSDDDDLGNDLSPEDMKVAELATEVVSQALVFIKELVRTISGLIKLEKPNDSGSFVDTLEKLLKLCQGIGEQIDELGACLYPPQEFPAMKTALDKISN KVDEARICVESLNCSAESFFQGCTSLKSSIKLMETELDFSMTTDLGDRLQNVSLNQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71150			unknown protein		Lus10034613 [exp]	0	1
AT4G38370			Phosphoglycerate mutase family...		Lus10014434 [exp]	9.2	0.6792
AT1G51650			ATP synthase epsilon chain, mi...		Lus10034841 [exp]	17.3	0.6534
AT2G33370			Ribosomal protein L14p/L23e fa...		Lus10024942 [exp]	21.6	0.6638
AT5G40080			Mitochondrial ribosomal protei...		Lus10034241 [exp]	22.2	0.6362
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10019881 [exp]	25.3	0.6679
AT5G62300			Ribosomal protein S10p/S20e fa...		Lus10027194 [exp]	27.1	0.6652
AT2G19385			zinc ion binding (.1)		Lus10027626 [exp]	29.6	0.6645
AT5G26110			Protein kinase superfamily pro...		Lus10006903 [exp]	29.9	0.6482
AT2G15910			CSL zinc finger domain-contain...		Lus10021009 [exp]	32.0	0.6191
AT1G71150			unknown protein		Lus10021799 [exp]	36.0	0.6118

Compare expression of checked genes

Lus10034613 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.