Gene [FLAX] | FIBexDB

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Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	Alias	TAIR10 short description
AT5G19610	1605 / 0	GNL2	GNOM-like 2 (.1)
AT1G13980	911 / 0	VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2)
AT5G39500	821 / 0	GNL1, ERMO1	ENDOPLASMIC RETICULUM MORPHOLOGY 1, GNOM-like 1 (.1)
AT1G01960	221 / 1e-57	EDA10	embryo sac development arrest 10, SEC7-like guanine nucleotide exchange family protein (.1)
AT4G38200	208 / 1e-53		SEC7-like guanine nucleotide exchange family protein (.1)
AT3G60860	204 / 2e-52		SEC7-like guanine nucleotide exchange family protein (.1)
AT4G35380	187 / 2e-47		SEC7-like guanine nucleotide exchange family protein (.1)
AT3G43300	170 / 6e-42	BEN1, ATMIN7	BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10021771 [exp]	2330 / 0	AT5G19610	1727 / 0.0	GNOM-like 2 (.1)
Lus10026627 [exp]	932 / 0	AT1G13980	2395 / 0.0	VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2)
Lus10030432 [exp]	926 / 0	AT1G13980	2383 / 0.0	VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2)
Lus10036789 [exp]	914 / 0	AT1G13980	2300 / 0.0	VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2)
Lus10037140 [exp]	892 / 0	AT1G13980	2274 / 0.0	VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2)
Lus10009300 [exp]	222 / 6e-58	AT3G60860	2741 / 0.0	SEC7-like guanine nucleotide exchange family protein (.1)
Lus10015863 [exp]	194 / 2e-49	AT4G38200	1880 / 0.0	SEC7-like guanine nucleotide exchange family protein (.1)
Lus10022983 [exp]	184 / 2e-46	AT4G38200	2320 / 0.0	SEC7-like guanine nucleotide exchange family protein (.1)
Lus10038084 [exp]	179 / 9e-45	AT3G43300	2350 / 0.0	BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2)

Poplar homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.018G075300 [exp]	1774 / 0	AT5G19610	1796 / 0.0	GNOM-like 2 (.1)
Potri.017G078900 [exp]	911 / 0	AT1G13980	2416 / 0.0	VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2)
Potri.017G078800 [exp]	773 / 0	AT1G13980	2180 / 0.0	VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2)
Potri.014G070600 [exp]	224 / 1e-58	AT3G60860	2664 / 0.0	SEC7-like guanine nucleotide exchange family protein (.1)
Potri.002G149200 [exp]	223 / 2e-58	AT3G60860	2689 / 0.0	SEC7-like guanine nucleotide exchange family protein (.1)
Potri.004G208400 [exp]	201 / 1e-51	AT4G38200	2354 / 0.0	SEC7-like guanine nucleotide exchange family protein (.1)
Potri.009G169800 [exp]	201 / 2e-51	AT4G38200	2335 / 0.0	SEC7-like guanine nucleotide exchange family protein (.1)
Potri.006G216900 [exp]	179 / 1e-44	AT3G43300	2728 / 0.0	BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
		PF01369 [flax] [poplar]	Sec7	Sec7 domain

Representative CDS sequence

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>Lus10034615 pacid=23162740 polypeptide=Lus10034615 locus=Lus10034615.g ID=Lus10034615.BGIv1.0 annot-version=v1.0

ATGGAGGGAACGGAAGCAGAGGAAGAAGGAAACACCAAGTACACGTCATCAACAAACAGGAAGAGCAGCAAGAAGAAAAGGATTGAGCTAGGGATCTCAT

GTATGCTCAACACCGAGGTTGCCTCCGTCCTCGCCGTCCTCCGTCGCCCACCGCCCGATCCCACGGCGGCGCAGTTCCTTTCCCAAGAGGATCAGTACGA

TACCGCCCTCGTCCACTCTTTCAAATCCCTCCGTACATTGATTTTCAACCCTCCTCAGGACTGGCAGACCATGGACCCCGCCGTCTACCTCACGCCATTC

CTCGACGTCATTCAATCCGACGAGATTCCCTCTGCTGCTACCTCCATCGCTCTCTACTCCGTCCTTAAGCTCCTCAGCGTCGGAATCTTCGACGAGCGGA

CCACCGGAGCAAGGGACGCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGAATCTTCGACGAGCGGACCACCGGAGCAAGGGACGCCATCAACTCCGTCGTCATGGGGATCACCGGA

TGCCGATTGGAACGAACGGATCCCGTCTCGGAAGACGCCGTTATGATGCGGATCCTCCAGATCTTGACGGCGATCATGAAGCATCAGGCTGCCATTCTGT

TAACGGATCAGGCCGTGTGTACGGTGGTCAACACTTGTTTCCAGGTGGTTCAGCAATCGGCGAGTAGAGGGGATTTGCTTCAACGGAGTGCTAGGTATAC

GATGCACGAATTGGTCCGTATGATTTTTGCGAAATTGCAGGATATTGAAGTGAACCCTGGGGAGGAATCGGATACGGACATGGACGATGCCGATTTCGAT

GGGAATCTGGATTCAGGGTATGGAATTCGTTGCGCTGTTGATATCTTCCATTTCTTGTGTTCGTTGCTCAATGTTGTGGAAGTTGTGGAGAGTGAAGGGA

ATTTGTATCGTACTTCTGATGAGGATGTTCAGCTTTTCGCATTGGTATTGATAAATTCGGCCATCGAGTTGAGTGGAGACGTGGTTGGGAGTCACCCCAA

GCTTCTTCGGATGATCCAAGACGATTTATTCCATCATTTAATCCATTATGGAGCATCTTCCAGCCCCCTCATTTTGTCCATGATCTGTAGCACAGTTTTG

AACATTTACCATTTCCTTCGCAGGTTTGTTCGTCTTCAACTTGAGGCATTCTTCAAGTACGTGTTGTTGAGAGTTGCAGCAAATGGAGTTTCAACTCAGC

TTCAAGAAGTTGCACTTGAGGGAATCGTTGATTTTTGTAGGCAGCCAACTTTTATCATTGAAGCATATGTGAACTATGACTGTGATCCACTATGCATTAA

CATGTTTGAGGAAACTGCAAAGTTGCTCTGCAAGCTGTCATTTCCAGGAGCAAGTCTTGCAACGTCATTACAAGCTCAAGCATTTGAAGGTCTAGTTGGG

ATCATTCACAACATAGCCGAGAACATCAACAGGGAAGGTGATTCCACGCCTTCTGGACCGTACCCGGTTCACTTGACAGAGTACAGTAAGTTCTGGCAAG

ACAGGCCTTTGGAGAATAACGATGCATCTGTGGCATATATGAGGATAAGAAAAGTACAAAAGAGGAAAATTTTGGTTGCTTCAAACCATTACTCTAGAGA

TGAGAAGAAAGGGTTGGAGTATTTGAGGCTAAGTTTGATGTTTCCTAATCCTCCAGATCCTAAAGATTTTGCTTTCTTCTTTCGATTCACACCGGGGTTA

GACAAGACTATGATTGGAGATTACTTGGGTGATCCTGATGATTTCCACATTCAGGTTCTGAAAGAGTTCAGTTGTACTTTTGGGTTCTCAGGAATGGTTC

TTGACACTGCTCTCCGTACTTATCTTGCCACCTTCAGGTTGCCTGGAGAGTCCCAAAAAATCCAGAGAATAATGGAAGCTTTCTCGGATCAATTCTATGA

GCAACAATCTTCCGATATTTTCGCAACTAAAGATGCAGTTTTCGTCCTTTGTTACTCTCTCATTATGCTCAATACTGACCAGCACAATCCTCAGGTCAAG

AAGAAGATGACAGAGGAAGAGTTCATCAGGAACAATAGGGCTATCAATGCTGGACAGGATCTCCCTAGGGAATACCTCTCCGAGCTTTTCCAATCGATAT

CTTCTAAAGCAATTGCACTCTTCGGACAAACTGGACAGCAAGACATGAATCCTGGACTGTGGATAGAGCTGATGGGTGCTTCCAGATATTTGCAACCCTT

CACTCTTTATGATTTCGACCGTCGTCTCGGGAGAGATATGTTTGCCTCCGTTGCTGGTCCGGCAGTTGCAGCCCTCACCGCATTTTTCGAGCAATCTGAT

GAGGATGAAATGTTCCACGAATGCGTTGAAGCATTGATTTCGGTAGCCAGAATAGTACAGTATGGCCTGGAAGATACGCTAGACGAGATGCTTGCCTCAT

TGTGTAAATGTACCACACTACTGAATCCTTATGCATCGGCAGAAGAGACATTGTTTGCCTTTAGCCATGATCTGAAGCCCAGAATGGCTGTACTTGCAGT

CTTCAGCATTGCGAATAATTTCGGCTGTGGGATTCGAGGAGCGTGGAGGCCAATCTTGGACTGTCTGTTGAAGCTGAAAAAGCTCAAGTTGCTTCCTTCA

TCTGTAGTTGAGATACACAATTCTTTAGCGCCTTCCGTTGATTCGTCATCTGACCATTCTAGAAATGACGGTGGCTTAATTTTCCCATCTCATGAATCAA

AATCATCAGGTGGCAGCAATCGCCAGAGCTCAACCATGATTGGCAGATTCTCTCAATTTTTGTCTCCTGACAGTATGGAAGAATCCTTGTCTCTCGGCCT

GAATGAATTCGAGCAGAATCAAAAAGTTATCAAGCAGTGTCAGATCGGGAGCATATTCACCAACAGCTGGAACTTGTCGGATGAAACTCTAGCATATCTA

GGTCGTACTCTAATCTTTGCATCAGCAGGCAAAGGGCAGAAATTTGCGACGCCAATCGAGGAAGAAGAAACCATAGAATTCTGTTGGGATTTGATAGTTG

CTCTATCTTTTGCCAACATTAACCGGTTACATAACTTCTGGCCAGCCTACCATGAAAACTTGTTTGAAGCTATTCACTTTCCTCTATTCTCCTCAATCCC

ATTTGCAGAGAAGGTCATAATTGCCCTCTTCAGGATCTGCCTCAAGCTACTCTCATCTGCCAGAGTAGAGAAACTGCCAGAGGAACTCATCTTCAAATCC

ATCAACATGATGTGGCAAATAGAGAAGCAGATTCTAGACACATGTTGTGAATCCATAACAAAGTCAGTCAGCAAGATTTTGTTTGAATACCCTGCAAATC

TGCAGAGCTTCCTGGGTTGGAAAACAGTCCTCCATCTCTTATCCGTCTCTGGACGCCATCAGGAAACCTACGATCAGGGAGTAGAGACGCTTATCATGCT

CGTTTCGGACCAAACTCATGTTTCCCCCGTGAATTACCCTTTCTGCATCGACTGTGCATTTGGGTTCGTGGCGCTTAAGAACAGTCCCCTGGAGAAAAAC

CTGAAGATTCTGGACCTTCTGGCGGAATCGGTCAGCTTGCTAATCCATTGGTATAAAAACTTCTCAGACCCTGGTAGCAATTTCAGTACAGCAAGCACAG

GAAGCAATAACTCTTTCCAGGATGCCGCTTCGTTTTCGGTCAGCTTGTTCCTGAAATTAGGAGAAGCCTTCAGGAAAACCAGCTTGGCAAGACGAGAGGA

AATCAGGAACCATGCCATCAAGTCTCTTCATAAGAGCTTTTCCTTAGCAGAGGAGTTGGATTTCACACCTGCCAACTGCCTAAACTTGTTCAACTTAGTG

GTATTTGCCATGGTAGACGATCTGCACGAAAAGCTGATAGAATACTCGAGGCGGGAAGGGGCGGAGAGGGAGATGAGGAGTATGGAAGGGACTTTGAGCT

TGGCGATGGAACTTATGACGGAGGTTTATCTACAGTTCCTGAAGCCAATAGCATCAAGCCCCGGGTTCAGGACGTTCTGGTTGGGTCTATTGAGAAGGAT

GGATACATGTATGAAAGCTGATCTTGGGGAGTATGGTGAGACCAAGTTGCAGGAGGTGATTCCAGGTCTCTTGAAGAAAATGATTATTAAGATGAAAGAA

GATGAAATTTTGGTACAGAAGGAAGATGATGATCTGTTTGAAATAGCTTACATTCAAATTCAGTGGATTGCTCCTGCCTTGAAGGAAGAACTTTTTCCTG

AATTGGAAATTTAG

AA sequence

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>Lus10034615 pacid=23162740 polypeptide=Lus10034615 locus=Lus10034615.g ID=Lus10034615.BGIv1.0 annot-version=v1.0

MEGTEAEEEGNTKYTSSTNRKSSKKKRIELGISCMLNTEVASVLAVLRRPPPDPTAAQFLSQEDQYDTALVHSFKSLRTLIFNPPQDWQTMDPAVYLTPF

LDVIQSDEIPSAATSIALYSVLKLLSVGIFDERTTGARDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIFDERTTGARDAINSVVMGITG

CRLERTDPVSEDAVMMRILQILTAIMKHQAAILLTDQAVCTVVNTCFQVVQQSASRGDLLQRSARYTMHELVRMIFAKLQDIEVNPGEESDTDMDDADFD

GNLDSGYGIRCAVDIFHFLCSLLNVVEVVESEGNLYRTSDEDVQLFALVLINSAIELSGDVVGSHPKLLRMIQDDLFHHLIHYGASSSPLILSMICSTVL

NIYHFLRRFVRLQLEAFFKYVLLRVAANGVSTQLQEVALEGIVDFCRQPTFIIEAYVNYDCDPLCINMFEETAKLLCKLSFPGASLATSLQAQAFEGLVG

IIHNIAENINREGDSTPSGPYPVHLTEYSKFWQDRPLENNDASVAYMRIRKVQKRKILVASNHYSRDEKKGLEYLRLSLMFPNPPDPKDFAFFFRFTPGL

DKTMIGDYLGDPDDFHIQVLKEFSCTFGFSGMVLDTALRTYLATFRLPGESQKIQRIMEAFSDQFYEQQSSDIFATKDAVFVLCYSLIMLNTDQHNPQVK

KKMTEEEFIRNNRAINAGQDLPREYLSELFQSISSKAIALFGQTGQQDMNPGLWIELMGASRYLQPFTLYDFDRRLGRDMFASVAGPAVAALTAFFEQSD

EDEMFHECVEALISVARIVQYGLEDTLDEMLASLCKCTTLLNPYASAEETLFAFSHDLKPRMAVLAVFSIANNFGCGIRGAWRPILDCLLKLKKLKLLPS

SVVEIHNSLAPSVDSSSDHSRNDGGLIFPSHESKSSGGSNRQSSTMIGRFSQFLSPDSMEESLSLGLNEFEQNQKVIKQCQIGSIFTNSWNLSDETLAYL

GRTLIFASAGKGQKFATPIEEEETIEFCWDLIVALSFANINRLHNFWPAYHENLFEAIHFPLFSSIPFAEKVIIALFRICLKLLSSARVEKLPEELIFKS

INMMWQIEKQILDTCCESITKSVSKILFEYPANLQSFLGWKTVLHLLSVSGRHQETYDQGVETLIMLVSDQTHVSPVNYPFCIDCAFGFVALKNSPLEKN

LKILDLLAESVSLLIHWYKNFSDPGSNFSTASTGSNNSFQDAASFSVSLFLKLGEAFRKTSLARREEIRNHAIKSLHKSFSLAEELDFTPANCLNLFNLV

VFAMVDDLHEKLIEYSRREGAEREMRSMEGTLSLAMELMTEVYLQFLKPIASSPGFRTFWLGLLRRMDTCMKADLGEYGETKLQEVIPGLLKKMIIKMKE

DEILVQKEDDDLFEIAYIQIQWIAPALKEELFPELEI

DESeq2's median of ratios [FLAX]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description	Locus	MR	r
AT5G19610		GNL2	GNOM-like 2 (.1)	Lus10034615 [exp]	0	1
AT1G28240			Protein of unknown function (D...	Lus10011175 [exp]	7.5	0.7749
AT5G01360		TBL3	TRICHOME BIREFRINGENCE-LIKE 3,...	Lus10005042 [exp]	19.2	0.7645
AT5G48940			Leucine-rich repeat transmembr...	Lus10028612 [exp]	20.9	0.7540
AT3G63340			Protein phosphatase 2C family ...	Lus10014699 [exp]	21.2	0.7577
AT2G40130			Double Clp-N motif-containing ...	Lus10028282 [exp]	36.1	0.7473
AT2G15080		AtRLP19	receptor like protein 19 (.1.2...	Lus10039512 [exp]	40.3	0.7413
AT3G24240			Leucine-rich repeat receptor-l...	Lus10018911 [exp]	42.3	0.7366
AT5G66310			ATP binding microtubule motor ...	Lus10014268 [exp]	42.5	0.7379
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)	Lus10028638 [exp]	43.2	0.7493
AT2G42320			nucleolar protein gar2-related...	Lus10011304 [exp]	47.2	0.7442

Lus10034615 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Lus10034615 [FLAX]

DESeq2's median of ratios [FLAX]

Coexpressed genes

Lus10034615 coexpression network