Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22960 604 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G01110 290 / 4e-87 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G05670 287 / 4e-86 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT1G62670 277 / 3e-83 RPF2 rna processing factor 2 (.1) AT5G65560 281 / 2e-82 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G19440 277 / 9e-82 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G39710 275 / 1e-81 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G02150 274 / 7e-81 EMB2794 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62590 271 / 7e-81 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G63130 270 / 7e-81 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000364 [exp] 1391 / 0 AT1G22960 619 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013283 [exp] 303 / 7e-93 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10036020 [exp] 305 / 6e-92 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007468 [exp] 300 / 9e-91 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 274 / 8e-81 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 272 / 2e-80 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 276 / 6e-80 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039056 [exp] 269 / 7e-79 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042529 [exp] 267 / 1e-76 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G276500 [exp] 323 / 2e-99 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G025600 [exp] 298 / 9e-91 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G035700 [exp] 290 / 3e-87 AT1G05670 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.005G050300 [exp] 286 / 5e-87 AT1G12700 466 / 5e-156 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G032600 [exp] 284 / 3e-86 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G015900 [exp] 282 / 2e-84 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G105400 [exp] 287 / 8e-84 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 280 / 9e-84 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G045000 [exp] 277 / 1e-83 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050400 [exp] 276 / 3e-83 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10034616 pacid=23162877 polypeptide=Lus10034616 locus=Lus10034616.g ID=Lus10034616.BGIv1.0 annot-version=v1.0 ATGTCAATGACCCTCTCCCTACGAGCTTCAAAGGCTTTACCTTCCTCATCCTTCTTCTTCGAGGTACGACACCGTTGTTTCCCTATTGTTCCCCGCCTTC TCACCGCCGAAGCCGCTGCTGAACCACTTGCTGAATCAATTCCCCCTGAATCTATCCATCATTACAAAGACCTTATTTTTAGCACTGTTCAGCATAAGCC CTTTGCCTATTGCAACCAAAACTGGGGGTTTGAGCTGTTTCACCCTGTAATTACTGATCCTGACTTGCTGGCTCGAGTCATATCCTCGATGCACGAAAAG CCCCAAGTAGTTTTGAGGTTTTTCAGATGGGTTCAGAGCCAACCAGGGTTTAAGTGCTCGGAATCTGTATGTTGCGCTCTTCTTGAGGTTTTGGCGGATA ACGGTATGATGAAGCCTGCTTATTGGGTTGTGGAGAGGGTGATTGAAAGACAAATGGATGGGATTGTCGACGTATTGATTGGTAATAATGGGCGCTTTGA TTATCCGGTTTTGATCAAGATTCTTGATCTTTTGCTGTGGGTTTACACCAAGAAATCCATGGTTAAGCAGTGTTTATTGGTTTTTGAGAAGATGCTGAGA AGTGGGATGTTGCCTGATATTAAGAACTGCAACAGGATTCTCAGGGTGCTTCGAGACAAGAAGATGGAAGCTGAAGCTAATCAAGTGTATGGAATGATGG GAGAATATGGAGTTAAGCCTACTACCATTACGTATAATACAATGTTGGATTTGTTTTGCAAGGAAGGCCGGGTGCAGCAAGTCCTGAATCTTGTGTCGGA GATGCAAACCGCTGGTGTTGCTCCCAACGAAGTGACGTATAATGTGTTGATCAATGGGTTGTCGAAAAGAGGGGAGTTAGAGCAAACTTTGGGATTCATA GGGGAGATGATGCAAGCAGGATTGGGAGTTTCGTCCTATACCTATAATCCTCTAATTTTCGAGTATTGCAAAAGAGGGTTGTTTATCGAGGCGTTGGGCC TTGGAAACGAGATGGTGACAAAAGGGGTGGCTCCTACAGTATCAACTCATAATGCAATCATCTATGGGTTCTGCAAATATGGGAGAATAAGTGATGCTAG GAAGCTGTTAGTAGACATGTTGAGGAACAATGTGATGCCGGACATAATTTCGTATAATTCGCTTATTTATGGGTACTGTAGGTTGGGGCATGTTGGTGCT GCTTTTCTTTTGTTTGATGAGTTAAGTTATCGGAGGCTTCGTCCTACTGTGGTTACATATAATACGCTCATAGATGGGCTTTGCAGATTGGGGGATTTGG AAGGTGCTCGAAAGCTGAAATATGATATGGTCAGTCATGGGATCCTTCCTGATGTCTTTACCTACACCATTCTTGTTAATGGTTCGTGCAAGTTCAGAAA TATGTCCATGGCCAAGGAATTTTTCAATGAGATGCTGCGTGCAGGGTTATCGCCTGATCGGTATACATATACTGCACGGATTATGGGTGAACTGCAGATT GGTGACACAACTAAGGCATTTGATTTACAGGAAAAAATGCAGGCTAAGGGGATCCCTCCTGGTGTATTTACCTATAATGTCCTTGTCTATGGACTGTATA GGTTGGGTAAGTTTGAAGATGCTGAGGAAACTTTGCAGAAAATGGTTAAAGATGGTTTAGTCCCTGATCATATAACCTACACCACCATCATACATGCACA TTTGGAAAATGGGTGTCTGATGAAAGGCAGGGAGATCTTCTACGAGATGTTGAGCACGGGGCAGAAGCCTACAGTCGTAACTTACACGATATTGATTCAC GCTCATGCACTCAAAGGGAGGCTTGAATTGGCAACCATGTTTTTTTCGGAGATGCAAAACAAAGGGCTTGTTCCGAATGTTATCACGTACAACGCTTTGA TAAATGGATTTTCCAAAGTAGGAGAGATGTATCAAGCATACACATATTTTCACGAGATGGAACGAAAAGGTGTATCTCCTAACAAGTACACGTTCACCAT ATTGATTAGTGGGAATTGCGACATCGGGGACTGCCAGGGGGCTTTGACACTATACAAAGATATGCTAGATAGAGAGATTGAGCCAGATTCTTGTACTCAT AGTGCACTGTTGAAAGACCTGCATAAAGACTACAAATTGCACGCTGTGCAGTACATTGAGAGTTTGTTAGTTGAAGATAGTGATGCGTCAATGGTCAATA CATTTGATGCTGCAAGAGGCTAG
AA sequence Show only first row Show all	>Lus10034616 pacid=23162877 polypeptide=Lus10034616 locus=Lus10034616.g ID=Lus10034616.BGIv1.0 annot-version=v1.0 MSMTLSLRASKALPSSSFFFEVRHRCFPIVPRLLTAEAAAEPLAESIPPESIHHYKDLIFSTVQHKPFAYCNQNWGFELFHPVITDPDLLARVISSMHEK PQVVLRFFRWVQSQPGFKCSESVCCALLEVLADNGMMKPAYWVVERVIERQMDGIVDVLIGNNGRFDYPVLIKILDLLLWVYTKKSMVKQCLLVFEKMLR SGMLPDIKNCNRILRVLRDKKMEAEANQVYGMMGEYGVKPTTITYNTMLDLFCKEGRVQQVLNLVSEMQTAGVAPNEVTYNVLINGLSKRGELEQTLGFI GEMMQAGLGVSSYTYNPLIFEYCKRGLFIEALGLGNEMVTKGVAPTVSTHNAIIYGFCKYGRISDARKLLVDMLRNNVMPDIISYNSLIYGYCRLGHVGA AFLLFDELSYRRLRPTVVTYNTLIDGLCRLGDLEGARKLKYDMVSHGILPDVFTYTILVNGSCKFRNMSMAKEFFNEMLRAGLSPDRYTYTARIMGELQI GDTTKAFDLQEKMQAKGIPPGVFTYNVLVYGLYRLGKFEDAEETLQKMVKDGLVPDHITYTTIIHAHLENGCLMKGREIFYEMLSTGQKPTVVTYTILIH AHALKGRLELATMFFSEMQNKGLVPNVITYNALINGFSKVGEMYQAYTYFHEMERKGVSPNKYTFTILISGNCDIGDCQGALTLYKDMLDREIEPDSCTH SALLKDLHKDYKLHAVQYIESLLVEDSDASMVNTFDAARG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22960			Pentatricopeptide repeat (PPR)...		Lus10034616 [exp]	0	1
AT1G74960		ATKAS2, KAS2, F...	ARABIDOPSIS BETA-KETOACYL-ACP ...		Lus10034886 [exp]	13.2	0.8243
AT1G29220			transcriptional regulator fami...		Lus10029236 [exp]	17.0	0.7823
AT2G18510		EMB2444	embryo defective 2444, RNA-bin...		Lus10041728 [exp]	22.5	0.8371
AT4G32360			Pyridine nucleotide-disulphide...		Lus10015217 [exp]	54.6	0.7610
AT1G16900			Alg9-like mannosyltransferase ...		Lus10028153 [exp]	90.9	0.8022
AT3G01610		CDC48C, EMB1354	embryo defective 1354, cell di...		Lus10039722 [exp]	116.1	0.7977
AT1G15900			unknown protein		Lus10041672 [exp]	123.5	0.7624
AT5G22120			unknown protein		Lus10008366 [exp]	149.0	0.7647
AT2G41020			WW domain-containing protein (...		Lus10038992 [exp]	156.6	0.7524
AT5G40610			NAD-dependent glycerol-3-phosp...		Lus10014889 [exp]	164.9	0.7529

Compare expression of checked genes

Lus10034616 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.