Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08510 274 / 2e-88 FATB fatty acyl-ACP thioesterases B (.1) AT3G25110 245 / 6e-78 ATFATA fatA acyl-ACP thioesterase (.1) AT4G13050 244 / 1e-77 Acyl-ACP thioesterase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000365 [exp] 781 / 0 AT1G08510 274 / 2e-88 fatty acyl-ACP thioesterases B (.1) Lus10007942 [exp] 523 / 0 AT1G08510 288 / 6e-94 fatty acyl-ACP thioesterases B (.1) Lus10013480 [exp] 501 / 3e-177 AT1G08510 287 / 2e-93 fatty acyl-ACP thioesterases B (.1) Lus10017751 [exp] 280 / 1e-90 AT1G08510 602 / 0.0 fatty acyl-ACP thioesterases B (.1) Lus10033072 [exp] 280 / 1e-90 AT1G08510 605 / 0.0 fatty acyl-ACP thioesterases B (.1) Lus10011839 [exp] 238 / 9e-75 AT3G25110 508 / 0.0 fatA acyl-ACP thioesterase (.1) Lus10038190 [exp] 234 / 2e-73 AT3G25110 493 / 1e-175 fatA acyl-ACP thioesterase (.1) Lus10025912 [exp] 233 / 7e-73 AT3G25110 503 / 1e-179 fatA acyl-ACP thioesterase (.1) Lus10022772 [exp] 229 / 2e-71 AT3G25110 493 / 8e-176 fatA acyl-ACP thioesterase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G117400 [exp] 521 / 0 AT1G08510 294 / 2e-96 fatty acyl-ACP thioesterases B (.1) Potri.008G126200 [exp] 424 / 6e-148 AT1G08510 239 / 2e-75 fatty acyl-ACP thioesterases B (.1) Potri.012G051400 [exp] 421 / 1e-146 AT1G08510 297 / 1e-97 fatty acyl-ACP thioesterases B (.1) Potri.006G155800 [exp] 282 / 1e-91 AT1G08510 612 / 0.0 fatty acyl-ACP thioesterases B (.1) Potri.006G157200 [exp] 282 / 1e-91 AT1G08510 612 / 0.0 fatty acyl-ACP thioesterases B (.1) Potri.018G072700 [exp] 274 / 2e-88 AT1G08510 611 / 0.0 fatty acyl-ACP thioesterases B (.1) Potri.012G101500 [exp] 271 / 2e-87 AT1G08510 329 / 4e-110 fatty acyl-ACP thioesterases B (.1) Potri.015G099600 [exp] 269 / 8e-87 AT1G08510 330 / 2e-110 fatty acyl-ACP thioesterases B (.1) Potri.001G177600 [exp] 240 / 1e-75 AT1G08510 343 / 2e-115 fatty acyl-ACP thioesterases B (.1) Potri.002G245600 [exp] 239 / 2e-75 AT3G25110 521 / 0.0 fatA acyl-ACP thioesterase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0050 [flax] [poplar] HotDog PF01643 [flax] [poplar] Acyl-ACP_TE Acyl-ACP thioesterase
Representative CDS sequence Show only first row Show all	>Lus10034617 pacid=23162747 polypeptide=Lus10034617 locus=Lus10034617.g ID=Lus10034617.BGIv1.0 annot-version=v1.0 ATGTCTGCTTTCTCAACCCGCCTGGTTTGTTTCCGTTTGCCTATGATCAACAGCAGCCGTGTAAGGTTGAACTCTGTGAAGGTCAACAGCGTGAAGTCAA CCCTGCGGTCGTATGGAAGTTTGGAGCTTGATCATATGGAAACGACAGAGGAGAACAAGAGGCAGAACATACCGACGGAGAAGAAGTACGTGGATAGGCA TAGACATGGTCTGATGATTGACAACGGCGTTGGGTATCGACAGACTGTCGTTATTCGATCTTATGAAGTTGGTCCTGACAAAACCGCCACTCTTGACAGC ATCCTTAATCTTCTTCAGGAAATAGCACTGAATCATGTGTGGATGTCGGGGCTGCTTGGGAATGGATTCGGAGCAACTCATGGGATGGTCAAGAACAATC TCATCTGGGTTGTTTCCAGAATGCATGTTCTCGTTGATCATTATCCTATCTGGGGCGAGATAGTGGAGATCGACACTTGGGTGGCAGCATCCGGTAAGAA TGGGATGCGTCGCGACTGGATCATTCGCAGCCAAGCTACCGGTCATGTCTATGCCCGCGCTACGAGTACTTGGGTGATGATGAACGAGAAGACGAGGCGG CTATCGAAGATGCCAGAGGTGGTTCGAGGGGAGATATCACCTTGGTTCATCGACAAACAAGCCATCCATCAAGACGATGCTAATATTGCTGCAGATAGGA TCGTCAAGTTGGACAACAATGCTAAATATGTCAACACTAACTTGAAGCCAAGGAGGAGCGACTTGGACATGAACCACCATGTCAACAATGTCAAGTATGT CAAATGGATGCTCGAGACAATCCCGGACAACTTCGTGGAGTCGCACCAGTTGTCTGGGATCATATTAGAGTACAGAAGGGAATGCAGGAGCTCAGACATT GTACAATCACTCTGTGAACCCGATGACGACACGATCAGCCTCCTCCAAACCTGCTTCATCAATACCGGCAGAAATTCAGACAAAAACAGCAGCAACAACA GTATAGCGAGACCGGATGAGATCTCATTGGCATCACAGATAATGCAAGGCAACGGACTCCTGTGCACCCTTGACAATCAGGAGCTCCTCATTCCTACCAG ATTCACGCATCTGCTTCAAACCCAGCTGCCAGACAAGAAGCCTAATGCATTCGAGGAGATCGTTCGGGGAAAGACCTTCTGGAAGAAGCGTCCAAAGCCA CGGAATATGGATTATGATGATCAACCTTGA
AA sequence Show only first row Show all	>Lus10034617 pacid=23162747 polypeptide=Lus10034617 locus=Lus10034617.g ID=Lus10034617.BGIv1.0 annot-version=v1.0 MSAFSTRLVCFRLPMINSSRVRLNSVKVNSVKSTLRSYGSLELDHMETTEENKRQNIPTEKKYVDRHRHGLMIDNGVGYRQTVVIRSYEVGPDKTATLDS ILNLLQEIALNHVWMSGLLGNGFGATHGMVKNNLIWVVSRMHVLVDHYPIWGEIVEIDTWVAASGKNGMRRDWIIRSQATGHVYARATSTWVMMNEKTRR LSKMPEVVRGEISPWFIDKQAIHQDDANIAADRIVKLDNNAKYVNTNLKPRRSDLDMNHHVNNVKYVKWMLETIPDNFVESHQLSGIILEYRRECRSSDI VQSLCEPDDDTISLLQTCFINTGRNSDKNSSNNSIARPDEISLASQIMQGNGLLCTLDNQELLIPTRFTHLLQTQLPDKKPNAFEEIVRGKTFWKKRPKP RNMDYDDQP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10034617 [exp]	0	1
AT2G17070			Arabidopsis protein of unknown...		Lus10020490 [exp]	8.9	0.8350
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Lus10026341 [exp]	48.0	0.7823
AT5G46060			Protein of unknown function, D...		Lus10005267 [exp]	81.4	0.7797
					Lus10000578 [exp]	195.5	0.7683

Compare expression of checked genes

Lus10034617 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.