Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15110 689 / 0 PSS1 phosphatidylserine synthase 1, phosphatidyl serine synthase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000366 [exp] 653 / 0 AT1G15110 617 / 0.0 phosphatidylserine synthase 1, phosphatidyl serine synthase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G117500 [exp] 710 / 0 AT1G15110 716 / 0.0 phosphatidylserine synthase 1, phosphatidyl serine synthase family protein (.1.2) Potri.008G126100 [exp] 709 / 0 AT1G15110 725 / 0.0 phosphatidylserine synthase 1, phosphatidyl serine synthase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03034 [flax] [poplar] PSS Phosphatidyl serine synthase
Representative CDS sequence Show only first row Show all	>Lus10034618 pacid=23162859 polypeptide=Lus10034618 locus=Lus10034618.g ID=Lus10034618.BGIv1.0 annot-version=v1.0 ATGGAGCCTAACGGTGGCAAAAGAGTGAAGAGAAAAGATCAGCTTGTACATGAAAATGGCGGTTTAGTAGTTTCTAGCGTTGGAGATGTAGATCCATGGA CTGCATGGGCATACAAGCCACGCACCATTTCGCTGTTACTTGTTGGTGCATGCTTTCTTATTTGGGCAAGCGGAGCCCTTGATCCTGAAAGCAGCTCAGC TGGTGATGTTGTTACATCAGTGAAAAGAGGTATATGGGCAATGATAGCGGTCTTTCTTGCTTATTGCTTACTGCAAGCTCCATCTACGATACTTATTAGA CCACATCCTGCAATTTGGCGGTTAGTTCATGGCATGGCAGTTATCTATCTGGTGGCCCTCACATTTTTGCTTTTCCAGAAGCGTGATGATGCTAGACAGT TCATGAAGTTCCTCCATCCTGACCTTGGAGTAGAACTCCCCGAAAAGTCATATGGTGCAGATTGTCGAATTTATACACCTGAAAATCCTACAAGCAGGTT TAAGAATCTTTATGATACGCTTTTTGATGAATTTGTTCTAGCTCATATATTTGGATGGTGGGGCAAGGCTATACTAATCCGCAATCAAGCTCTTCTTTGG GTGTTATCTGTTGGATTCGAGTTGCTAGAGTTTACCTTTCACCACATGTTACCGAATTTCAACGAGTGCTGGTGGGATAGTATCATTCTCGACATACTTA CATGCAATATGTTCGGTATATGGGCAGGGATGCGCACTGTAAGATACTTTGATGGTAAAACATACGAGTGGATTGGTATTAGTCGACAGCCTAACATCAT GGGAAAGGTAAAACGAACACTAGGACAGTTTACTCCGGCCCATTGGGACAAGGATGAATGGCATCCATTGCTTGGTCCGTGGCGATTTCTTCAAGTTCTT ACTCTCTGCATAATCTTCCTAACAGTAGAGCTCAACACATTCTTTCTCAAGTTCTGTCTTTGGATCCCTCCACGCAACCCTGTCATAATATACAGATTGA TCTTATGGTGGCTTATTGCCATCCCAACAATTCGTGAATACAACTCATATCTTCAGGATCGGAAACCGGTGAAAAAGGTTGGAGCTTTCTGTTGGCTGTC AGTTGCTATCTGCATTATTGAACTTCTTATCTGCATCAAGTTTGGACATGGTTTGTACCCGAACCCCATGCCTACGTTGTTGGTTGTCTTTTGGACGAGC GTTGGAGTTTCATTGGTATTGTCGGTGCTAGCATGGTCATGGCAATTGCAACGAAGAAGTCGCGAGAGAAAGAGACGATGA
AA sequence Show only first row Show all	>Lus10034618 pacid=23162859 polypeptide=Lus10034618 locus=Lus10034618.g ID=Lus10034618.BGIv1.0 annot-version=v1.0 MEPNGGKRVKRKDQLVHENGGLVVSSVGDVDPWTAWAYKPRTISLLLVGACFLIWASGALDPESSSAGDVVTSVKRGIWAMIAVFLAYCLLQAPSTILIR PHPAIWRLVHGMAVIYLVALTFLLFQKRDDARQFMKFLHPDLGVELPEKSYGADCRIYTPENPTSRFKNLYDTLFDEFVLAHIFGWWGKAILIRNQALLW VLSVGFELLEFTFHHMLPNFNECWWDSIILDILTCNMFGIWAGMRTVRYFDGKTYEWIGISRQPNIMGKVKRTLGQFTPAHWDKDEWHPLLGPWRFLQVL TLCIIFLTVELNTFFLKFCLWIPPRNPVIIYRLILWWLIAIPTIREYNSYLQDRKPVKKVGAFCWLSVAICIIELLICIKFGHGLYPNPMPTLLVVFWTS VGVSLVLSVLAWSWQLQRRSRERKRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15110		PSS1	phosphatidylserine synthase 1,...		Lus10034618 [exp]	0	1
AT2G17290		ATCPK6, ATCDPK3...	calcium dependent protein kina...		Lus10013842 [exp]	6.2	0.8725
AT4G15630			Uncharacterised protein family...		Lus10012809 [exp]	6.7	0.8629
AT1G03610			Protein of unknown function (D...		Lus10039803 [exp]	8.7	0.8234
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Lus10004559 [exp]	11.1	0.8767
AT4G34660			SH3 domain-containing protein ...		Lus10017500 [exp]	11.6	0.8503
AT1G78850			D-mannose binding lectin prote...		Lus10000579 [exp]	17.7	0.8340
AT5G45280			Pectinacetylesterase family pr...		Lus10033301 [exp]	17.8	0.7898
AT5G13820		HPPBF-1, ATTBP1...	H-PROTEIN PROMOTE, telomeric D...		Lus10000947 [exp]	18.7	0.8154
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Lus10000900 [exp]	24.5	0.8430
AT5G59590		UGT76E2	UDP-glucosyl transferase 76E2 ...		Lus10016460 [exp]	28.7	0.8513

Compare expression of checked genes

Lus10034618 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.