Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01140 455 / 6e-158 PDE345 PIGMENT DEFECTIVE 345, Aldolase superfamily protein (.1) AT4G38970 436 / 1e-150 FBA2 fructose-bisphosphate aldolase 2 (.1.2) AT2G21330 431 / 7e-150 FBA1 fructose-bisphosphate aldolase 1 (.1.2.3) AT4G26530 289 / 2e-93 Aldolase superfamily protein (.1.2) AT4G26520 282 / 6e-91 Aldolase superfamily protein (.1) AT2G36460 272 / 6e-87 Aldolase superfamily protein (.1.2) AT5G03690 269 / 1e-85 Aldolase superfamily protein (.1.2) AT3G52930 268 / 1e-85 Aldolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013477 [exp] 431 / 5e-147 AT2G01140 481 / 1e-168 PIGMENT DEFECTIVE 345, Aldolase superfamily protein (.1) Lus10031088 [exp] 425 / 7e-146 AT4G38970 674 / 0.0 fructose-bisphosphate aldolase 2 (.1.2) Lus10035473 [exp] 423 / 3e-145 AT4G38970 671 / 0.0 fructose-bisphosphate aldolase 2 (.1.2) Lus10035247 [exp] 405 / 2e-139 AT2G01140 466 / 3e-165 PIGMENT DEFECTIVE 345, Aldolase superfamily protein (.1) Lus10007940 [exp] 344 / 5e-115 AT2G01140 507 / 0.0 PIGMENT DEFECTIVE 345, Aldolase superfamily protein (.1) Lus10014373 [exp] 283 / 3e-91 AT2G36460 629 / 0.0 Aldolase superfamily protein (.1.2) Lus10032956 [exp] 283 / 3e-91 AT4G26530 635 / 0.0 Aldolase superfamily protein (.1.2) Lus10023870 [exp] 281 / 2e-90 AT2G36460 630 / 0.0 Aldolase superfamily protein (.1.2) Lus10027717 [exp] 270 / 6e-86 AT3G52930 622 / 0.0 Aldolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G117900 [exp] 473 / 5e-165 AT2G01140 697 / 0.0 PIGMENT DEFECTIVE 345, Aldolase superfamily protein (.1) Potri.008G125900 [exp] 473 / 5e-165 AT2G01140 700 / 0.0 PIGMENT DEFECTIVE 345, Aldolase superfamily protein (.1) Potri.004G162400 [exp] 439 / 1e-151 AT4G38970 704 / 0.0 fructose-bisphosphate aldolase 2 (.1.2) Potri.007G015500 [exp] 437 / 8e-151 AT4G38970 703 / 0.0 fructose-bisphosphate aldolase 2 (.1.2) Potri.009G124100 [exp] 434 / 7e-150 AT4G38970 703 / 0.0 fructose-bisphosphate aldolase 2 (.1.2) Potri.001G468100 [exp] 287 / 1e-92 AT4G26530 629 / 0.0 Aldolase superfamily protein (.1.2) Potri.011G165000 [exp] 281 / 2e-90 AT4G26530 628 / 0.0 Aldolase superfamily protein (.1.2) Potri.006G165700 [exp] 278 / 3e-89 AT2G36460 634 / 0.0 Aldolase superfamily protein (.1.2) Potri.018G090100 [exp] 275 / 4e-88 AT3G52930 620 / 0.0 Aldolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0035 [flax] [poplar] Peptidase_MH PF00274 [flax] [poplar] Glycolytic Fructose-bisphosphate aldolase class-I
Representative CDS sequence Show only first row Show all	>Lus10034619 pacid=23162826 polypeptide=Lus10034619 locus=Lus10034619.g ID=Lus10034619.BGIv1.0 annot-version=v1.0 ATGGCAGGAACTTCAGATCTGGTCATTTTGCAGGTGTTTTTGGGTCCGAACTCTGCCCACGATATTTCTCCCTCCCTCCCACCAAACCCACCTTTCTCAT TCTCCAGCGCCGCCTCCCCCAATCCCGATCTCCTCCCATGGCGTCTTCAGCTACCTTCACTAAGCTCGACGCCGCCTCCTCCACCTGGGTCGGCAAAAAA TCCTTCGCTTCCCGCTCCTCTCGACTCGCCCCTTCCCGCGTCAACTTCACCGTCCGCGCTAGCCTCTGTCCGCGCTAGCCTCTACCCCGACGAGCTCGTC AAAACTGCCAAAACGATTGCTTCCCCCGGACGTGGAATCCTGGCTATCGATGAATCCAATGCTACTTGTGGGAAGAGATTGGACTCGATCGGGTTGGAGA ACACTGAGACCAACAGGCAGGCTTACAGGCAGCTCTTGTTGACTACCCCTGGTCTTGGTGAATACATCTCTGGTTCTATTCTGTTCGAGGAGACTCTTTA CCAGTCTACTACTGATGGCAAGAAGTTTGTTGACTGTTTGGTTGAGCAGAACATTGTGCCCGGGATCAAAGTTGACAAGGGTTTGGTTCCCCTACCAGGG TCGAACAGTGAGTCCTGGTGCCAGGGTTTGGATGGTTTGGCTTCAAGGACTTCTGAGTATTACAAGCAAGGTGCTCGTTTTGCCAAGTGGAGGACAGTTG TGAGCATTCCCTGTGGTCCTTCTGCTCTTGCTGTTAAGGAGGCTGCATGGGGGCTTGCACGATATGCTTCCATCTGCCAGGATAGTGGACTTGTCCCAAT TGTGGAGCCTGAGATTCTTCTTGATGGAGACCATGGAATTGACAGGACCCTTGAGGTAGCATCAAAAGTTTGGTCAGAGGTGTTTTTCTACTTGGCCGAG AACAATGTTACCTTCGAAGGCATCCTATTGAAGCCTAGCATGGTTACACCCGGGGCTGACCACAAGGAGAAGGCTTCTCCAGAAACCATAGCAAAATACA CACTCACAATGCTTGTTAAGGAGGCTGCATGGGGGCTTGCACGATATGCTTCCATCTGCCAGCACAAGTACAAGCTTCTCAAGTTTGACAGGACCCTTGA GGTAGCATCAAAAGTTTGGTCAGAGGTGTTTTTCTACTTGGCCGAGAACAATGTTACCTTCGAAGGCATCCTATTGAAGCCTAGCATGGTTACACCCGGG GCTGACCACAAGGAGAAGGCTTCTCCAGAAACCATAGCAAAATACACACTCACAATGCTTAAGAGGACGGTACCACCTGCTGTTCCTGGAATCATGTTTT TGTCAGGAGGACAATCCGAGATGGAAGCAACCCTGAACCTAAACGCAATGAACCAGAGCCCCAACCCATGGCACGTGTCGTTCTCATATGCACGAGCACT GCAAAACAGTGTGCTCAAGACCTGGAAAGGACAACCCCAGAACGTCGAGGCAGCACAGAAGGCGCTGCTTGTACGTGCCAAGGCGAACTCCCTAGCTCAG CTAGGCAAGTACTCGGTGGAGGGAGAGAGCGATGAAGCCAAGACCGGCATGTTCGTCAAGGGATATACCTACTAA
AA sequence Show only first row Show all	>Lus10034619 pacid=23162826 polypeptide=Lus10034619 locus=Lus10034619.g ID=Lus10034619.BGIv1.0 annot-version=v1.0 MAGTSDLVILQVFLGPNSAHDISPSLPPNPPFSFSSAASPNPDLLPWRLQLPSLSSTPPPPPGSAKNPSLPAPLDSPLPASTSPSALASVRASLYPDELV KTAKTIASPGRGILAIDESNATCGKRLDSIGLENTETNRQAYRQLLLTTPGLGEYISGSILFEETLYQSTTDGKKFVDCLVEQNIVPGIKVDKGLVPLPG SNSESWCQGLDGLASRTSEYYKQGARFAKWRTVVSIPCGPSALAVKEAAWGLARYASICQDSGLVPIVEPEILLDGDHGIDRTLEVASKVWSEVFFYLAE NNVTFEGILLKPSMVTPGADHKEKASPETIAKYTLTMLVKEAAWGLARYASICQHKYKLLKFDRTLEVASKVWSEVFFYLAENNVTFEGILLKPSMVTPG ADHKEKASPETIAKYTLTMLKRTVPPAVPGIMFLSGGQSEMEATLNLNAMNQSPNPWHVSFSYARALQNSVLKTWKGQPQNVEAAQKALLVRAKANSLAQ LGKYSVEGESDEAKTGMFVKGYTY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01140		PDE345	PIGMENT DEFECTIVE 345, Aldolas...		Lus10034619 [exp]	0	1
AT3G63010		ATGID1B, GID1B	GA INSENSITIVE DWARF1B, alpha/...		Lus10008188 [exp]	1.0	0.9706
AT5G53560		B5#2, ATB5-A, A...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10008838 [exp]	1.7	0.9602
AT1G28120			unknown protein		Lus10026630 [exp]	2.0	0.9612
AT1G65930		cICDH	cytosolic NADP+-dependent isoc...		Lus10020798 [exp]	6.0	0.9576
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10001906 [exp]	6.1	0.9403
AT2G01140		PDE345	PIGMENT DEFECTIVE 345, Aldolas...		Lus10035247 [exp]	6.8	0.9364
AT5G15320			unknown protein		Lus10018064 [exp]	7.7	0.9487
AT3G63010		ATGID1B, GID1B	GA INSENSITIVE DWARF1B, alpha/...		Lus10008189 [exp]	7.7	0.9518
AT1G28290		AGP31	arabinogalactan protein 31 (.1...		Lus10025526 [exp]	8.8	0.9517
AT4G05390		ATRFNR1	root FNR 1 (.1.2)		Lus10023266 [exp]	9.5	0.9567

Compare expression of checked genes

Lus10034619 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.