Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47850 471 / 2e-165 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) AT5G18550 308 / 1e-101 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT3G06410 307 / 2e-101 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT3G02830 277 / 2e-90 C3HZnF ZFN1 zinc finger protein 1 (.1) AT5G16540 253 / 3e-81 C3HZnF ZFN3 zinc finger nuclease 3 (.1.2.3) AT1G04990 200 / 1e-60 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT3G48440 196 / 2e-58 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT5G63260 183 / 1e-53 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT2G32930 181 / 8e-53 C3HZnF ZFN2 zinc finger nuclease 2 (.1.2) AT3G12680 174 / 1e-49 C3HZnF HUA1 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035248 [exp] 697 / 0 AT2G47850 490 / 8e-172 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) Lus10013476 [exp] 521 / 0 AT2G47850 532 / 0.0 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) Lus10007941 [exp] 517 / 0 AT2G47850 524 / 0.0 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) Lus10033962 [exp] 349 / 1e-117 AT5G18550 456 / 7e-158 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10002880 [exp] 343 / 6e-115 AT5G18550 457 / 3e-158 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10020196 [exp] 307 / 1e-101 AT3G02830 510 / 0.0 zinc finger protein 1 (.1) Lus10026996 [exp] 306 / 3e-101 AT3G02830 508 / 3e-180 zinc finger protein 1 (.1) Lus10035330 [exp] 215 / 2e-65 AT1G04990 335 / 1e-111 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10015156 [exp] 204 / 1e-61 AT1G04990 299 / 5e-98 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G022500 [exp] 380 / 7e-130 AT5G18550 422 / 7e-145 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.008G215700 [exp] 367 / 2e-124 AT5G18550 397 / 8e-135 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.013G086800 [exp] 311 / 4e-103 AT3G02830 542 / 0.0 zinc finger protein 1 (.1) Potri.019G053200 [exp] 306 / 3e-101 AT3G02830 527 / 0.0 zinc finger protein 1 (.1) Potri.014G159500 [exp] 234 / 3e-73 AT1G04990 312 / 6e-103 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.002G223700 [exp] 233 / 1e-72 AT1G04990 340 / 8e-114 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.012G092500 [exp] 174 / 9e-50 AT5G63260 362 / 2e-121 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.015G089100 [exp] 174 / 1e-49 AT5G63260 373 / 9e-126 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.008G080300 [exp] 161 / 8e-45 AT3G12680 544 / 0.0 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1) Potri.010G176300 [exp] 152 / 2e-41 AT3G12680 578 / 0.0 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0537 [flax] [poplar] CCCH_zf PF00642 [flax] [poplar] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Lus10034620 pacid=23162806 polypeptide=Lus10034620 locus=Lus10034620.g ID=Lus10034620.BGIv1.0 annot-version=v1.0 ATGGAGCCGTACGGTCACAACAAGGCAATCGATGCTCCGCAGCTCACTGAATGGAGTCCCGCCGGAGCGGAGACTGGCCTTGAAGAATCGATGAGGGGAT TAGGGATTTCAAGTAACGAAGCGTATCCTGAACGTCCAGGGTTCCCCAATTGTGTTTACTATATGCGGACTGGGGCCTGTGGGTATGGTGGTCGGTGCCG CTACAATCACCCTCGCGATCGAGCTGCGGCTGAGGCAACTGTAAGAGCCACGGGGTTGTTTCCAGAACGGAATGGGGATCCCCCATGTCAGTTTTACTTG AAGACTGGAACCTGTAAATTCGGTGCATCTTGCAAATTCAACCATCCCAAGCACAGAGGTGGATTCTTGATCAATGTTACTCTAAATACACAGGGATACC CATTAAGACCGGATGAGGAAGAATGCTCCTACTATTTGCAAACGGGCGGCTGCAAGTTCGGTATAACTTGTAAATTCCATCATCCTCAGCGAGCTGACAC AACATCTGCACCTCAGTTTTATCAGCCAGTGCAATCTCCTTCTGCAGCAGCCACAAATCTAAGAGTGAGGCTCCCTGGTACATTTATGCAGGGAACGTAC GGTCCTGTATTGTTTTCTCCTGGGGTGGTACCTATTCCGGGTTGGAGCCCTTACTCGGCATCTGTAAGCCCTGTCCAGTCTCCTGGTGCACAAACTGCTG TTGGAGCAACTTCTCTATATGGAGTGACACAACTGACTGCTACAACATCAGCAGCGCCTCATAGACCTTATCCTTCTCTACTGTCTTCTGGTGCTCTCAC AAGCAGTACCCAGAAGGAGCATTATACATTTCCAGAGAGACCAGGGGAACCAGAATGCCAGTACTACATAAAAACTGGGGACTGTAAATATGGTTTGTCT TGCAGATATCATCATCCTCGTGATAGAGTTGCACCCATCACAGATAGTGTCCTCAATCCGCTTGGCCTGCCGTTGCGTCTGGGGATGCAGCCATGCAGTT TCTACTTGCAAACCGGGCACTGCAAATTCAGCTACAAGTGCAAGTTCGATCATCCCATAGGAGGAGGTGCCATGCGATACAGTCCGTTGGCTTCATCCCT GGTTGATATGCCTATTGCAACCTAG
AA sequence Show only first row Show all	>Lus10034620 pacid=23162806 polypeptide=Lus10034620 locus=Lus10034620.g ID=Lus10034620.BGIv1.0 annot-version=v1.0 MEPYGHNKAIDAPQLTEWSPAGAETGLEESMRGLGISSNEAYPERPGFPNCVYYMRTGACGYGGRCRYNHPRDRAAAEATVRATGLFPERNGDPPCQFYL KTGTCKFGASCKFNHPKHRGGFLINVTLNTQGYPLRPDEEECSYYLQTGGCKFGITCKFHHPQRADTTSAPQFYQPVQSPSAAATNLRVRLPGTFMQGTY GPVLFSPGVVPIPGWSPYSASVSPVQSPGAQTAVGATSLYGVTQLTATTSAAPHRPYPSLLSSGALTSSTQKEHYTFPERPGEPECQYYIKTGDCKYGLS CRYHHPRDRVAPITDSVLNPLGLPLRLGMQPCSFYLQTGHCKFSYKCKFDHPIGGGAMRYSPLASSLVDMPIAT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47850	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10034620 [exp]	0	1
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Lus10040996 [exp]	1.0	0.9407
AT1G54610			Protein kinase superfamily pro...		Lus10012805 [exp]	4.2	0.9256
AT3G13060		ECT5	evolutionarily conserved C-ter...		Lus10037028 [exp]	6.3	0.8982
AT1G54610			Protein kinase superfamily pro...		Lus10033975 [exp]	8.1	0.9146
AT5G03870			Glutaredoxin family protein (....		Lus10017029 [exp]	11.4	0.9239
AT5G25590			Protein of unknown function (D...		Lus10037902 [exp]	11.8	0.9167
AT5G14620		DMT7, DRM2	domains rearranged methyltrans...		Lus10032136 [exp]	11.9	0.8494
AT4G20940			Leucine-rich receptor-like pro...		Lus10023260 [exp]	12.4	0.9146
AT4G18820			AAA-type ATPase family protein...		Lus10015234 [exp]	14.5	0.8879
AT3G54750			unknown protein		Lus10029345 [exp]	15.0	0.9133

Compare expression of checked genes

Lus10034620 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.