Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26410 241 / 9e-80 Uncharacterised conserved protein UCP022280 (.1) AT2G45060 121 / 6e-33 Uncharacterised conserved protein UCP022280 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035249 [exp] 514 / 0 AT4G26410 244 / 7e-81 Uncharacterised conserved protein UCP022280 (.1) Lus10013474 [exp] 323 / 3e-112 AT4G26410 250 / 1e-83 Uncharacterised conserved protein UCP022280 (.1) Lus10007935 [exp] 291 / 6e-100 AT4G26410 207 / 4e-67 Uncharacterised conserved protein UCP022280 (.1) Lus10042878 [exp] 130 / 1e-36 AT2G45060 286 / 3e-97 Uncharacterised conserved protein UCP022280 (.1) Lus10028177 [exp] 121 / 7e-33 AT2G45060 268 / 4e-90 Uncharacterised conserved protein UCP022280 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G001300 [exp] 278 / 2e-94 AT4G26410 266 / 4e-90 Uncharacterised conserved protein UCP022280 (.1) Potri.002G142900 [exp] 127 / 2e-35 AT2G45060 287 / 2e-97 Uncharacterised conserved protein UCP022280 (.1) Potri.014G058700 [exp] 112 / 8e-30 AT2G45060 293 / 4e-100 Uncharacterised conserved protein UCP022280 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034621 pacid=23162873 polypeptide=Lus10034621 locus=Lus10034621.g ID=Lus10034621.BGIv1.0 annot-version=v1.0 ATGGGAGATGCAATTGTCGAAAGCCAAAACAGCAACGAATTTTCAATTGTCGGAGGGAAAGTAGAAGAAGTGGCCAAATCAGGCAAAGATGTGATGAACA ATGCAACAGCTGCAGGAGCAAGCGGTAACTGGGTGTACGATTTGCAGAAGTCGGTAGTAGAATCAAAGGATTCGGCAATACGCTCTGCCAATGGCTTTCG GCGATGCTCCTCATACCATTTGCAGAACCTGCAGGATCGTTACGTGCCTCGTGCCATCTCTAATTTGAGGACTTATGAAGATGCTCTCTTCACCAAACTA AAAGATGGACTAGCCACTTCCAAAGAACACCCAGTTGCTTCTCTTGGAGTTGTGCTCGCCTCTTCCCTTATTCTCATGCGAGGTCCACGGAGATTTCTAT TGCGGCAGACATGGGGTCGATTTGAGACTGAGGAGTCACGATTCCATAGAGCTGAGAAGAATGTTAAAGACTTCTGTGTGTCTGTTGATCAGATGAAGAA GGACAGCCAAAAGTTGCTTGAAAGGGCTGCTTTAGCTCACAAAGACATAAAACATGGCCATGCCGAGCTCATGGGTGCAGGAAATCAAATAAGAAGTCTA GCTAAATCAGTTTACAAGGTTGAGCGGCAGGCTTCTGATTTGGTGGATGGTCTGCGAGAAATCCCTGGAAGAGAAGCCCTGAAACTACGACTTGAGGTGG CTTCAATGGCATCCAATTTGAAAAAGCAGAAAACAGACCTAGATAAGCAGATTCTGAAGATTTCTGAACTAGGAGTCCCAGTTTGA
AA sequence Show only first row Show all	>Lus10034621 pacid=23162873 polypeptide=Lus10034621 locus=Lus10034621.g ID=Lus10034621.BGIv1.0 annot-version=v1.0 MGDAIVESQNSNEFSIVGGKVEEVAKSGKDVMNNATAAGASGNWVYDLQKSVVESKDSAIRSANGFRRCSSYHLQNLQDRYVPRAISNLRTYEDALFTKL KDGLATSKEHPVASLGVVLASSLILMRGPRRFLLRQTWGRFETEESRFHRAEKNVKDFCVSVDQMKKDSQKLLERAALAHKDIKHGHAELMGAGNQIRSL AKSVYKVERQASDLVDGLREIPGREALKLRLEVASMASNLKKQKTDLDKQILKISELGVPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26410			Uncharacterised conserved prot...		Lus10034621 [exp]	0	1
AT1G53580		GLY3, GLX2-3, E...	GLYOXALASE 2-3, ETHE1-LIKE, gl...		Lus10020760 [exp]	10.9	0.8001
AT2G36960	MYB	TKI1	TSL-kinase interacting protein...		Lus10013816 [exp]	14.1	0.8113
AT2G34930			disease resistance family prot...		Lus10016341 [exp]	15.0	0.7869
AT3G61930			unknown protein		Lus10002685 [exp]	15.6	0.7791
AT2G30600			BTB/POZ domain-containing prot...		Lus10016014 [exp]	18.8	0.7537
AT1G70650			Ran BP2/NZF zinc finger-like s...		Lus10032790 [exp]	19.1	0.7980
AT5G01010			unknown protein		Lus10029706 [exp]	29.7	0.7767
					Lus10027950 [exp]	30.5	0.7929
AT1G67490		KNOPF, KNF, GCS...	KNOPF, glucosidase 1 (.1.2)		Lus10015796 [exp]	44.9	0.7569
AT3G47340		AT-ASN1, DIN6, ...	DARK INDUCIBLE 6, ARABIDOPSIS ...		Lus10026376 [exp]	48.0	0.7458

Compare expression of checked genes

Lus10034621 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.