Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38880 259 / 3e-77 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005085 [exp] 354 / 2e-113 AT5G38880 1081 / 0.0 unknown protein Lus10034366 [exp] 351 / 5e-112 AT5G38880 1121 / 0.0 unknown protein Lus10035251 [exp] 239 / 5e-74 AT5G38880 256 / 3e-78 unknown protein Lus10035250 [exp] 134 / 3e-37 AT5G38880 131 / 1e-36 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G100300 [exp] 295 / 2e-90 AT5G38880 1120 / 0.0 unknown protein Potri.004G114600 [exp] 280 / 5e-85 AT5G38880 1110 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034622 pacid=23162718 polypeptide=Lus10034622 locus=Lus10034622.g ID=Lus10034622.BGIv1.0 annot-version=v1.0 ATGGCCCAACCAGATGCCATACTGGAATGGATTCACAAGGAGATGGGGTACAGGCCCCTGGGTCCTTACATTACTTATTCAACTAGCGAGTCCCAGCTAC CTTCCGTCGATGCGCTCCGGAAGATTTGTCGCGGGAATATGATTCCGGTTTGGAGTTTCTTGATCAATAGAGTGAAATCAGAGAAGACGGTGAAGAGTAT AAAGAAGAACATCGCGGTACACGGTGTTGAAGGTGACGGTGACGGGGGGCGGAGTGAAGGAGGTGGTAGGAGGAAGGAGAAGGAGGTATCTAGTGCGGCT GAGAGTACGGATTCGGCTTTGCAAGAAAGGGAATTGGCTGCAAAGGAGATGGAGAGGTTGAGGAACATTGTTGGGCGGCAGAGGAAGGATCTCAAAGCTA GAATGTTGGAACTCTCTAGGGAAGAGGCCGAGAGAAAGAGAATGATCGAAGAACGTTCTAAAAAACAGACTTTGTTAACTTGTGATTATGATTGCTCGTA CTGCAGGCATAAGCAGGTGATGTTGGAATCCTATGATCAGCAGTGTGATGAAGCAGCAAAAATATTTGCTGAATATCACAAGCGTCTTTGTTACTATGTT AATCAAGCCAGAGATGCTCAAAAGTCGAGTGCTGACTCTTTGACGGAACGACTCTTTGATGGAAGTGGTTATTACTCCGTTGGATATGCTACCCAGTTCA ATTTCTTGAGAGAATTTGCTATTTTTCATCATCTTGCAAGGCTTTCTTATTTCATTAACGCTGTTAATATGAAGTTTTTGACAAAATATGAGAAGGCTCA TGTTCAGCAATTTCTGGCTACTGAAGATTCGCTTAACAAAGCTGCAGAGGCTAGGGACTTGTCTCAGAAGCTTATAAAGCGGTTGCACGGGAGTGGCAAT TCAGTTTCTTCAAATTCACTTGCTGCTAGTGGTGCATCTAAAAACATGGATACTTTCCGTCATTTTGAGGATGCAGCGACATTTTGGAATCAGCAGCCAT TGGCTGCAAGGGAATATGCATCAACTACTATAATTCCAGCATGCTCAGTTGTTTTGAGCATTGATCTTATTGATAATGAGTTTAAGGCTTTCTTCAGAAG CCCTGATAATAGTCTATATATGCTGCCTTCTACTCCACAGGCATTTTTGGAATCAATGGGATCAACAGGATCTACAGGCTCCGACGCTGCTGCTGCTGCA GATAAGAATGCTGCTCTACTGACAGCAAGAGCTGGTTTGGAGGGTTCAGATACTGGTTTAGCATCGGTGTTGGAGTCCTTGGAGTTCTGTCTAAATCTAC GTGGTTCAGAGGCTAGTGTTCTGGAGGACTTGGCAAAGGCGATCAACATGGTTCACATACGGCAGAATCTTGTGGAAAGTGGTCACACACTTTTGAACCA TGCATATCATGCGCAACTAGAATATGAAAGTTTAGCTTCCGAGCAGGAGAAGATTGTGAAGGAGAAGTGGCTTCCTGAGCTTAAAGCTGCAAGTTTGGCT TCGGAAGAATGCCTGAATGGTTGCAAATATGTTAGGAGATCGCTTAATGAATGCTGGGATCAACCAGCTTCCACAGTGGTTGATTGGGTTTATGTTGACG GACAAGACGTTGCTACTTGGATTAATCACCACATATGA
AA sequence Show only first row Show all	>Lus10034622 pacid=23162718 polypeptide=Lus10034622 locus=Lus10034622.g ID=Lus10034622.BGIv1.0 annot-version=v1.0 MAQPDAILEWIHKEMGYRPLGPYITYSTSESQLPSVDALRKICRGNMIPVWSFLINRVKSEKTVKSIKKNIAVHGVEGDGDGGRSEGGGRRKEKEVSSAA ESTDSALQERELAAKEMERLRNIVGRQRKDLKARMLELSREEAERKRMIEERSKKQTLLTCDYDCSYCRHKQVMLESYDQQCDEAAKIFAEYHKRLCYYV NQARDAQKSSADSLTERLFDGSGYYSVGYATQFNFLREFAIFHHLARLSYFINAVNMKFLTKYEKAHVQQFLATEDSLNKAAEARDLSQKLIKRLHGSGN SVSSNSLAASGASKNMDTFRHFEDAATFWNQQPLAAREYASTTIIPACSVVLSIDLIDNEFKAFFRSPDNSLYMLPSTPQAFLESMGSTGSTGSDAAAAA DKNAALLTARAGLEGSDTGLASVLESLEFCLNLRGSEASVLEDLAKAINMVHIRQNLVESGHTLLNHAYHAQLEYESLASEQEKIVKEKWLPELKAASLA SEECLNGCKYVRRSLNECWDQPASTVVDWVYVDGQDVATWINHHI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38880			unknown protein		Lus10034622 [exp]	0	1
AT4G33650		APEM1, DRP3A, A...	ABERRANT PEROXISOME MORPHOLOGY...		Lus10014041 [exp]	2.0	0.7320
AT3G09410			Pectinacetylesterase family pr...		Lus10025347 [exp]	8.5	0.7493
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Lus10015635 [exp]	9.4	0.7214
AT5G60040		NRPC1	nuclear RNA polymerase C1 (.1....		Lus10013536 [exp]	32.6	0.6687
AT5G50340			ATP-dependent peptidases;nucle...		Lus10038258 [exp]	33.5	0.6968
AT1G51980			Insulinase (Peptidase family M...		Lus10025839 [exp]	40.7	0.6714
AT3G54860		ATVPS33	VACUOLAR PROTEIN SORTING 33, S...		Lus10038698 [exp]	46.0	0.6484
AT1G19110			inter-alpha-trypsin inhibitor ...		Lus10039919 [exp]	48.2	0.6218
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Lus10001760 [exp]	52.9	0.6867
AT1G04010		ATPSAT1	phospholipid sterol acyl trans...		Lus10008234 [exp]	61.9	0.6648

Compare expression of checked genes

Lus10034622 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.