Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18830 653 / 0 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) AT2G16120 643 / 0 ATPMT1, AtPLT1 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 1, polyol/monosaccharide transporter 1 (.1) AT2G16130 640 / 0 ATPMT2, AtPLT2 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 2, polyol/monosaccharide transporter 2 (.1) AT4G36670 542 / 0 AtPMT6, AtPLT6 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) AT2G18480 504 / 8e-176 AtPLT3 Major facilitator superfamily protein (.1) AT2G20780 440 / 4e-150 AtPLT4 Major facilitator superfamily protein (.1) AT5G59250 212 / 7e-62 Major facilitator superfamily protein (.1) AT5G17010 209 / 3e-61 Major facilitator superfamily protein (.1.2.3.4) AT5G16150 208 / 1e-60 PGLCT, GLT1 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) AT1G11260 206 / 4e-60 ATSTP1, STP1 sugar transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035255 [exp] 1023 / 0 AT3G18830 656 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10042339 [exp] 732 / 0 AT3G18830 735 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10006971 [exp] 722 / 0 AT3G18830 631 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10011288 [exp] 721 / 0 AT3G18830 721 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10040482 [exp] 719 / 0 AT3G18830 722 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10011287 [exp] 684 / 0 AT3G18830 692 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10041731 [exp] 577 / 0 AT4G36670 664 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) Lus10026032 [exp] 527 / 0 AT4G36670 645 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) Lus10014323 [exp] 528 / 8e-180 AT5G66740 650 / 0.0 Protein of unknown function (DUF620) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G113600 [exp] 718 / 0 AT3G18830 717 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G152300 [exp] 713 / 0 AT3G18830 625 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G151725 [exp] 700 / 0 AT3G18830 640 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.007G027900 [exp] 555 / 0 AT4G36670 638 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) Potri.006G158700 [exp] 475 / 1e-164 AT3G18830 477 / 6e-165 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.013G135200 [exp] 460 / 4e-158 AT2G20780 747 / 0.0 Major facilitator superfamily protein (.1) Potri.004G039100 [exp] 418 / 1e-141 AT2G20780 647 / 0.0 Major facilitator superfamily protein (.1) Potri.004G097800 [exp] 218 / 7e-64 AT5G16150 656 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Potri.017G032200 [exp] 209 / 2e-61 AT2G43330 743 / 0.0 inositol transporter 1 (.1) Potri.007G126800 [exp] 209 / 4e-61 AT2G43330 710 / 0.0 inositol transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10034623 pacid=23162861 polypeptide=Lus10034623 locus=Lus10034623.g ID=Lus10034623.BGIv1.0 annot-version=v1.0 ATGGCTGACGTCATGCCGCCGACGAACGGAAAAACCCTGGCGGATTTCGACCCTCCGATGAAACCAAAGAGGAACAAATTCGCCTTCGTCTGCGCTACCG TCGCTTCCATGACCTCCGTCTTGCTTGGTTACGACATCGGAGTGATGAGTGGGGCCATCATCTACATCAAGAAGCAGTTCAATATCTCCGACGTCAAAAT TGAACTCCTCGTCGGACTCCTCAACATCTACTCCCTCTTCGGATCTTTCATTGCCGGCAGAGTCTCCGACAGAATCGGCCGCCGCAAGACAATCGTCGTC GCAGCCGCCATTTTCTTTGTCGGCTCCCTCCTCATGGGTTTTGCCACCAACTACGCCTTCCTCATGGTCGGCCGTTTCGTGGCCGGCATCGGTGTCGGTT TCGGCTGCATGATCGCTCCCGTCTATACTTCCGAGCTTGCTCCCGCCGCCTCCCGCGGTTTCCTCACTTCATTCCCCGAGGTTTTCATTAACATAGGGAT TCTACTGGGTTTCGTGTCGAACTACGCCTTCTCCAAACTTCCACAGAATCTAGGCTGGCGATTCATGCTCGGAATCGGCGCCGTCCCGTCGGTTTTCCTG GCCGTGAGCGTCCTCTTCATGCCTGAATCCCCACGGTGGCTCGTACTCCAAGGCCGACTGAAGGCTGCTAAGAGTGTGCTCCTCAAAACCTGCACCACGC CGGAGGAAGCCCAGCTGAGGCTCAACGACATCAAGGAAGCCGCGGGAATCCCGGAACACGTGAACGATGATGTCGTCCAAGTCGACAAGAAATCCCACGG AGAAGGCGTATGGAAAGAACTCATCCTCCACCCCACTCGTCCCGTGCGCCACATTCTAATGTGCGCCCTCGGGATCCACTTTTTCCAACAGGGTGCGGGC CTGGACGCCGTCGTTTTGTACAGCCCCAGAATCTTCGAGAAGGCCGGGTTGGCCACCCACAATGAGCAGCTTCTGGCCACCGTCGCCGTCGGGGTCGTGA AAACCTTATTCATCCTGGTCGCGACCTTCCTCCTCGACCGGGTCGGCCGTCGACCGCTGCTGCTCGGATCCTTCGCCGGGATAATCGCCTCTTTGGCCAC CCTCGGGATGAGCCTGACGGTCATCGGCCAAGACCCGACCAAGAAGATAAAATGGGCGGTGGGGGTGTGCATGACATCGGTACTTTCGGCGGTGGCATTT TTCTCGATCGGCGCAGGGCCGGTGACTGGGGTTTACAGTACGGAGATTTTCCCACTACGGCTGAGGGCGCAAGGGTTGAGCCTTGGAATCGCGACCAACA GGGTGGTGAGCGGCGTGATCACAATGACGTTCTTGTCCCTGTACAAGGCCATCACGATCGGAGGGGCGTTCTTCCTGTTTGCTGGGATCTCCACCGTAGG ATTCTTTTTCTTTTACCTGTTTTACCCCGAGACTCAGGGGAAGACACTAGAAGAGATCGATGGGGTTTTCGGTAACTTCATTCATTGGAGGTCGGCGAAT TTGAACAAGAGTGGTAATAAGGCGGAGAAGGATGTCCAGCTGGCGGAGAGGAATTAG
AA sequence Show only first row Show all	>Lus10034623 pacid=23162861 polypeptide=Lus10034623 locus=Lus10034623.g ID=Lus10034623.BGIv1.0 annot-version=v1.0 MADVMPPTNGKTLADFDPPMKPKRNKFAFVCATVASMTSVLLGYDIGVMSGAIIYIKKQFNISDVKIELLVGLLNIYSLFGSFIAGRVSDRIGRRKTIVV AAAIFFVGSLLMGFATNYAFLMVGRFVAGIGVGFGCMIAPVYTSELAPAASRGFLTSFPEVFINIGILLGFVSNYAFSKLPQNLGWRFMLGIGAVPSVFL AVSVLFMPESPRWLVLQGRLKAAKSVLLKTCTTPEEAQLRLNDIKEAAGIPEHVNDDVVQVDKKSHGEGVWKELILHPTRPVRHILMCALGIHFFQQGAG LDAVVLYSPRIFEKAGLATHNEQLLATVAVGVVKTLFILVATFLLDRVGRRPLLLGSFAGIIASLATLGMSLTVIGQDPTKKIKWAVGVCMTSVLSAVAF FSIGAGPVTGVYSTEIFPLRLRAQGLSLGIATNRVVSGVITMTFLSLYKAITIGGAFFLFAGISTVGFFFFYLFYPETQGKTLEEIDGVFGNFIHWRSAN LNKSGNKAEKDVQLAERN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10034623 [exp]	0	1
AT5G24530		DMR6	DOWNY MILDEW RESISTANT 6, 2-ox...		Lus10024882 [exp]	9.8	0.8030
AT5G50175			unknown protein		Lus10043318 [exp]	13.7	0.7844
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10028738 [exp]	14.9	0.7709
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10002960 [exp]	24.0	0.7530
AT2G47510		FUM1	fumarase 1 (.1.2)		Lus10009114 [exp]	27.0	0.7555
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10006347 [exp]	27.1	0.7778
AT2G42250		CYP712A1	"cytochrome P450, family 712, ...		Lus10023827 [exp]	28.3	0.7662
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10021203 [exp]	35.5	0.7054
AT4G14640		CAM8, AtCML8	calmodulin-like 8, calmodulin ...		Lus10041179 [exp]	35.9	0.7275
AT3G58040		SINAT2	seven in absentia of Arabidops...		Lus10039202 [exp]	36.9	0.7532

Compare expression of checked genes

Lus10034623 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.