Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68200 243 / 6e-79 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT1G66810 171 / 3e-51 C3HZnF AtC3H14 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT2G35430 55 / 1e-08 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT1G32360 50 / 1e-06 C3HZnF Zinc finger (CCCH-type) family protein (.1) AT3G19360 43 / 0.0002 C3HZnF Zinc finger (CCCH-type) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035256 [exp] 569 / 0 AT1G68200 248 / 6e-81 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10019431 [exp] 51 / 4e-07 AT3G19360 266 / 2e-87 Zinc finger (CCCH-type) family protein (.1) Lus10000486 [exp] 50 / 1e-06 AT1G32360 337 / 6e-115 Zinc finger (CCCH-type) family protein (.1) Lus10004573 [exp] 50 / 1e-06 AT1G32360 342 / 1e-116 Zinc finger (CCCH-type) family protein (.1) Lus10043287 [exp] 45 / 6e-05 AT3G19360 290 / 7e-96 Zinc finger (CCCH-type) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G118700 [exp] 270 / 6e-90 AT1G68200 243 / 1e-79 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.017G119900 [exp] 186 / 1e-56 AT1G66810 221 / 3e-70 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.004G095100 [exp] 180 / 3e-54 AT1G66810 215 / 7e-68 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.003G061600 [exp] 56 / 1e-08 AT3G19360 109 / 1e-27 Zinc finger (CCCH-type) family protein (.1) Potri.003G093600 [exp] 54 / 4e-08 AT1G32360 353 / 2e-120 Zinc finger (CCCH-type) family protein (.1) Potri.001G140800 [exp] 54 / 4e-08 AT1G32360 355 / 3e-121 Zinc finger (CCCH-type) family protein (.1) Potri.004G169500 [exp] 52 / 2e-07 AT3G19360 284 / 1e-93 Zinc finger (CCCH-type) family protein (.1) Potri.009G130600 [exp] 51 / 3e-07 AT3G19360 276 / 9e-91 Zinc finger (CCCH-type) family protein (.1) Potri.016G046600 [exp] 44 / 5e-05 AT5G06770 265 / 2e-89 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Potri.005G176900 [exp] 44 / 0.0001 AT1G66810 48 / 4e-06 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0537 [flax] [poplar] CCCH_zf PF00642 [flax] [poplar] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Lus10034624 pacid=23162700 polypeptide=Lus10034624 locus=Lus10034624.g ID=Lus10034624.BGIv1.0 annot-version=v1.0 ATGGAGAAGGAGAACTACTCCTCCGCAACACACTCAGATCTCGCCGCCGATCTATCGCGAAACTACTTCAATACTAGCGACGACCTCGATTACGCTTCAT TATTCCGCCCTCAGTCGTCCGATTTTCTCTCCGTTTCACCGACCAGCTATCTCTCCAAGTCAGTTGGTCCGCACCAGGACATGGTGAACCGTCACGCGCT ATGCCTCACGCGCCTCCGCCAGGCAGCAAGGGAGGTTGAGTCCCTCCGCCAGGAGAACGACGTTCTCCGCTCGATCAACCACGAGCTGAACAGCAACCTC AACGTCCTGGTCCGTTCCTCTGCCTTTCAGAATCACTTTCTTTCGTCGCGCTACGACTCTTCTCCGCCGCTTGACCTGCTCAATGCTTTCCGTGATTGCA ACCTCGGCGGAGGCGGAGGCGAGGAGCTGTCCGATGATCAGAGTCCGACGAGCGTTATCGAGGTGCAGGGCGCGGGAGATACGGACCGGATTTTGCTACC GAAGAGTATTTCCGTGAGGTCTAATGCCTACCTGAAGATTGGACAGCACGCCGCAGCAGGCGCAAGCACCAAGACTCGAAGTGTGACTCGGCCTCGCGAC ACAAAGCCTCTCGACGGATCGGCTAAGGTTTACATTCGTGGAAATGGAGCAAAGAAAGAGGAAGAGGCACTTGAGCTGGAAGTCTACAGCCAAGGGGTGC TAAAAACGGAGCTTTGCAACAAATGGCAGGCGACTGGTGCTTGTCCATATGGTAATCACTGCCAATTTGCTCACGGCGTTGAAGAGCTGCGACCTGTAAT CCGCCATCCTCGCTACAAGACTGAAGTATGCAGAATGGTTCTTGCTGGTGATGTTTGTCCTTATGGCCATCGCTGCCACTTCAGGCACGCCATCACTGAG CAGGACAAGGTCACTGAACGCGTCAACAGCAAACCAACCAAGCTCGACAGGTAA
AA sequence Show only first row Show all	>Lus10034624 pacid=23162700 polypeptide=Lus10034624 locus=Lus10034624.g ID=Lus10034624.BGIv1.0 annot-version=v1.0 MEKENYSSATHSDLAADLSRNYFNTSDDLDYASLFRPQSSDFLSVSPTSYLSKSVGPHQDMVNRHALCLTRLRQAAREVESLRQENDVLRSINHELNSNL NVLVRSSAFQNHFLSSRYDSSPPLDLLNAFRDCNLGGGGGEELSDDQSPTSVIEVQGAGDTDRILLPKSISVRSNAYLKIGQHAAAGASTKTRSVTRPRD TKPLDGSAKVYIRGNGAKKEEEALELEVYSQGVLKTELCNKWQATGACPYGNHCQFAHGVEELRPVIRHPRYKTEVCRMVLAGDVCPYGHRCHFRHAITE QDKVTERVNSKPTKLDR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68200	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10034624 [exp]	0	1
AT1G68200	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10035256 [exp]	1.0	0.9869
AT1G79620			Leucine-rich repeat protein ki...		Lus10021003 [exp]	2.0	0.9857
AT5G67230		IRX14-L, I14H	IRREGULAR XYLEM 14-LIKE, IRREG...		Lus10011500 [exp]	3.5	0.9778
AT5G67230		IRX14-L, I14H	IRREGULAR XYLEM 14-LIKE, IRREG...		Lus10041601 [exp]	4.2	0.9728
AT1G18200		AtRABA6b	RAB GTPase homolog A6B (.1)		Lus10042009 [exp]	5.7	0.9687
AT2G46770	NAC	NST1, ANAC043, ...	NAC SECONDARY WALL THICKENING...		Lus10017340 [exp]	5.9	0.9735
					Lus10024940 [exp]	6.2	0.9462
AT3G08500	MYB	ATMYB83	myb domain protein 83 (.1)		Lus10031850 [exp]	6.5	0.9689
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Lus10007497 [exp]	6.7	0.9675
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10034670 [exp]	6.9	0.9752

Compare expression of checked genes

Lus10034624 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.