Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68190 185 / 2e-53 CO B-box zinc finger family protein (.1) AT1G28050 101 / 6e-23 CO COL15 B-box type zinc finger protein with CCT domain (.1) AT5G48250 99 / 2e-22 CO COL10 B-box type zinc finger protein with CCT domain (.1) AT2G33500 99 / 4e-22 CO COL14 B-box type zinc finger protein with CCT domain (.1.2) AT4G15250 94 / 7e-21 CO COL11 B-box type zinc finger protein with CCT domain (.1) AT3G07650 95 / 8e-21 CO COL9 CONSTANS-like 9 (.1.2.3.4) AT3G21880 89 / 4e-19 CO COL12 B-box type zinc finger protein with CCT domain (.1) AT2G47890 87 / 4e-19 CO COL13 B-box type zinc finger protein with CCT domain (.1.2) AT5G24930 81 / 5e-16 CO COL4, ATCOL4 CONSTANS-like 4 (.1) AT2G24790 71 / 1e-13 CO COL3, ATCOL3 CONSTANS-like 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035257 [exp] 615 / 0 AT1G68190 194 / 8e-59 B-box zinc finger family protein (.1) Lus10031584 [exp] 101 / 1e-22 AT3G21880 256 / 2e-81 B-box type zinc finger protein with CCT domain (.1) Lus10002578 [exp] 98 / 2e-21 AT1G28050 299 / 3e-97 B-box type zinc finger protein with CCT domain (.1) Lus10001806 [exp] 97 / 6e-21 AT1G28050 298 / 1e-96 B-box type zinc finger protein with CCT domain (.1) Lus10015098 [exp] 95 / 6e-21 AT3G21880 260 / 4e-84 B-box type zinc finger protein with CCT domain (.1) Lus10041096 [exp] 84 / 3e-17 AT5G48250 374 / 2e-129 B-box type zinc finger protein with CCT domain (.1) Lus10040900 [exp] 84 / 5e-17 AT2G47890 289 / 1e-95 B-box type zinc finger protein with CCT domain (.1.2) Lus10020105 [exp] 75 / 3e-14 AT5G24930 398 / 6e-138 CONSTANS-like 4 (.1) Lus10026909 [exp] 74 / 5e-14 AT5G24930 404 / 3e-140 CONSTANS-like 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G125200 [exp] 311 / 9e-100 AT1G68190 144 / 8e-39 B-box zinc finger family protein (.1) Potri.014G170600 [exp] 99 / 4e-22 AT3G07650 328 / 3e-110 CONSTANS-like 9 (.1.2.3.4) Potri.001G061800 [exp] 100 / 6e-22 AT2G33500 213 / 6e-64 B-box type zinc finger protein with CCT domain (.1.2) Potri.003G166000 [exp] 95 / 2e-20 AT1G28050 204 / 2e-59 B-box type zinc finger protein with CCT domain (.1) Potri.001G323500 [exp] 86 / 1e-17 AT2G33500 213 / 2e-64 B-box type zinc finger protein with CCT domain (.1.2) Potri.014G134601 [exp] 84 / 1e-17 AT2G47890 174 / 4e-53 B-box type zinc finger protein with CCT domain (.1.2) Potri.017G039301 [exp] 85 / 2e-17 AT3G21880 288 / 2e-94 B-box type zinc finger protein with CCT domain (.1) Potri.007G121200 [exp] 84 / 3e-17 AT3G21880 291 / 1e-95 B-box type zinc finger protein with CCT domain (.1) Potri.002G214500 [exp] 83 / 8e-17 AT3G07650 355 / 9e-121 CONSTANS-like 9 (.1.2.3.4) Potri.002G208100 [exp] 79 / 1e-15 AT2G47890 276 / 4e-91 B-box type zinc finger protein with CCT domain (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034625 pacid=23162792 polypeptide=Lus10034625 locus=Lus10034625.g ID=Lus10034625.BGIv1.0 annot-version=v1.0 ATGGTTTGGTGCGCTGGATTGGTGCCAGAACACAAGGGGGTGGGCATCGCATCACAAGACACAAGCGATGTCACATGCACAACGATAACTTACACCTCAT CTCCTAAGGACAAATCAAAGTTGGATAGGCAAGCTGATCTGCTGCACAGCACCAAAAAACCAACGCCACCCAACCTTTTTCCCTCTTGTTCTTCTTCTTC TTCTTCTTCTTCTCTTGTGCCTGACTCTCATTGTTCCTTTAACCACCTACAACTTAGAGCAGTGGTCTATTGCAAGTCTGATCTAGCATATCTTTGCCTT TCCTGTGATACCAAGGTCCATTCAGCTAATGCACTTTCAAGCCGTCACCTACGTTCTCTCATGTGTGACTCGTGCAGGCTGGAACCGACTTCTTTACAGT GCTTGAATCATAGGGTGTTTCTGTGTAATGAATGTGATCGCAGCCTACACGAAATGTGCTCTCTGGATCGGAAAAGAGAAGTTCGCAGCTACACTGGTTC CCCATCTGCAAAGGATTTTGCTGTCTTGTGGGGTTTGAGATTAGACGAGCTTCACAAAAGAGCTGCTGATACTCAGTTGTGTTCCACTTCTGCTGGACCT GTCGCCACCAGTTTTGGCTTTTCGGGGAATTCACCACGACGAACTAGAGGAGTTTCGAGAGTATCGGAGAAAAAGAGTTGTACAGCTCTTAAAAATGGTG CAGAATCTGATGTAATTTCAAGCAGTTACCTAACCAAGGTATCAGCTAAAGGTGCAATGAAGCAAGAGACAAGCTTCATACTGCAACAGATAAAGGATTT GGGAAATCTTCAGCTTGCAGAAGTTGATGCTAATGGTTCAGTGAAACCTCGGCCTTCGCCACTTTGGGACACCATGAAGAAGTTCAAAAACAGCTGTGAT CAAGATTTTGGTTCAGGGCTTCGATCAAGCAGCACCACCACCATTGCACCTCCAGATGTGAAAGTTGACCTGCAGGTTTCACCATTTTCTTTTTCTGAGA GTTCACCTCTGACATCAATTGCTGCAAATGGTCTTCTGGGAGAATCCATCTGGCAGTGCAAAAGTCCATTTCAGAATAGTCAGCTTTGGTCTCAAACCAT GCAAGACCTTGGCATCTGTGAAGATGTTTGCTACGATGATTTGAACATACCTGATGTCGACATAACCTTTCGTAACTTTGAAGAACTTTTTGGAGGTGAT CAAGAACCGATAATTAGAGAAATGATTGACGAAAAAGATGCATCGTGCTCCTCACTGGAGAAGGAGATGTCCCTTGATAAATCAATCAACTCCATTGAAA TGGCAAGCATAGGACTGCAGAATAGCTCTTCAATGAAACAGTTTTCCATTAATGTTATCACAGTGCATCAGACTTCAGATATCAACCTGCTTGAAACTGC GTTTGAGATTCACACGGAAACATCGTTTGCTTCATCTGTTTGTGGTAGTCATCCTCGCCAATTGGACAAAAACCGAGAACCTCTTAAGCAAGTTGAGATC GGACCATCGTGTTCGACCATGTCATTCTCCGTGTCTCACCAGAGTGCTGACAGCATTGCTACTGAAGATCTTGACAGTGCAGCCTCGCCATTATGTCGTT CATTGGAAGGTGATCATTTAAATTCCAGACAAGTTTCCATGTTGAGATACAAAGGAAAGAAAGCGTCGCAGTCGTAA
AA sequence Show only first row Show all	>Lus10034625 pacid=23162792 polypeptide=Lus10034625 locus=Lus10034625.g ID=Lus10034625.BGIv1.0 annot-version=v1.0 MVWCAGLVPEHKGVGIASQDTSDVTCTTITYTSSPKDKSKLDRQADLLHSTKKPTPPNLFPSCSSSSSSSSLVPDSHCSFNHLQLRAVVYCKSDLAYLCL SCDTKVHSANALSSRHLRSLMCDSCRLEPTSLQCLNHRVFLCNECDRSLHEMCSLDRKREVRSYTGSPSAKDFAVLWGLRLDELHKRAADTQLCSTSAGP VATSFGFSGNSPRRTRGVSRVSEKKSCTALKNGAESDVISSSYLTKVSAKGAMKQETSFILQQIKDLGNLQLAEVDANGSVKPRPSPLWDTMKKFKNSCD QDFGSGLRSSSTTTIAPPDVKVDLQVSPFSFSESSPLTSIAANGLLGESIWQCKSPFQNSQLWSQTMQDLGICEDVCYDDLNIPDVDITFRNFEELFGGD QEPIIREMIDEKDASCSSLEKEMSLDKSINSIEMASIGLQNSSSMKQFSINVITVHQTSDINLLETAFEIHTETSFASSVCGSHPRQLDKNREPLKQVEI GPSCSTMSFSVSHQSADSIATEDLDSAASPLCRSLEGDHLNSRQVSMLRYKGKKASQS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68190	CO		B-box zinc finger family prote...		Lus10034625 [exp]	0	1
AT1G68190	CO		B-box zinc finger family prote...		Lus10035257 [exp]	1.0	0.8586
AT2G25930		PYK20, ELF3	EARLY FLOWERING 3, hydroxyprol...		Lus10007459 [exp]	7.1	0.7471
AT2G24395			chaperone protein dnaJ-related...		Lus10026979 [exp]	10.2	0.7625
AT5G38520			alpha/beta-Hydrolases superfam...		Lus10023788 [exp]	13.5	0.7454
					Lus10009807 [exp]	14.5	0.7154
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015113 [exp]	21.5	0.7615
AT5G52110		CCB2, HCF208	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10027422 [exp]	22.8	0.7542
AT3G16350	MYB		Homeodomain-like superfamily p...		Lus10038279 [exp]	23.7	0.7118
AT4G35440		CLCE, ATCLC-E, ...	chloride channel E (.1.2)		Lus10013858 [exp]	32.6	0.7534
AT2G28070		ABCG3	ATP-binding cassette G3, ABC-2...		Lus10021440 [exp]	33.9	0.7576

Compare expression of checked genes

Lus10034625 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.