Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15080 380 / 2e-133 ATLPP2, LPP2, ATPAP2 PHOSPHATIDIC ACID PHOSPHATASE 2, lipid phosphate phosphatase 2 (.1) AT3G02600 355 / 3e-123 ATLPP3, LPP3 lipid phosphate phosphatase 3 (.1.2.3.4.5) AT2G01180 309 / 2e-105 ATLPP1, ATPAP1 LIPID PHOSPHATE PHOSPHATASE 1, phosphatidic acid phosphatase 1 (.1.2) AT3G18220 295 / 1e-99 Phosphatidic acid phosphatase (PAP2) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035261 [exp] 510 / 0 AT1G15080 443 / 2e-158 PHOSPHATIDIC ACID PHOSPHATASE 2, lipid phosphate phosphatase 2 (.1) Lus10009155 [exp] 340 / 1e-115 AT3G02600 488 / 1e-172 lipid phosphate phosphatase 3 (.1.2.3.4.5) Lus10028489 [exp] 336 / 1e-115 AT3G02600 465 / 1e-166 lipid phosphate phosphatase 3 (.1.2.3.4.5) Lus10035262 [exp] 314 / 1e-106 AT3G02600 429 / 3e-151 lipid phosphate phosphatase 3 (.1.2.3.4.5) Lus10007933 [exp] 328 / 2e-106 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10034630 [exp] 297 / 6e-100 AT3G02600 418 / 4e-147 lipid phosphate phosphatase 3 (.1.2.3.4.5) Lus10013470 [exp] 255 / 6e-85 AT3G02600 326 / 1e-112 lipid phosphate phosphatase 3 (.1.2.3.4.5) Lus10013469 [exp] 78 / 8e-16 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G119300 [exp] 417 / 1e-147 AT1G15080 452 / 1e-161 PHOSPHATIDIC ACID PHOSPHATASE 2, lipid phosphate phosphatase 2 (.1) Potri.010G119400 [exp] 337 / 1e-115 AT3G02600 407 / 9e-143 lipid phosphate phosphatase 3 (.1.2.3.4.5) Potri.017G119500 [exp] 336 / 3e-115 AT3G02600 460 / 1e-163 lipid phosphate phosphatase 3 (.1.2.3.4.5) Potri.004G095400 [exp] 330 / 1e-112 AT3G02600 465 / 1e-164 lipid phosphate phosphatase 3 (.1.2.3.4.5) Potri.008G124900 [exp] 324 / 1e-110 AT3G02600 420 / 3e-148 lipid phosphate phosphatase 3 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0525 [flax] [poplar] pap2 PF01569 [flax] [poplar] PAP2 PAP2 superfamily
Representative CDS sequence Show only first row Show all	>Lus10034629 pacid=23162831 polypeptide=Lus10034629 locus=Lus10034629.g ID=Lus10034629.BGIv1.0 annot-version=v1.0 ATGCCGGAGATTCAATTGGGTACCCATACTTTGAAGTCTCATGGAGTCAAAGTTGCAAGGACGCATATGCATGACTGGTTCATACTTCTGCTACTTATTG TGATAGAAATCGTTCTTAATATCATAGAACCGTTTCACCGTTTTGTTGGGAAAGATATGTTGACTGACCTTTCATTCCCACTGAAATCAAACACTGTTCC TGTTTGGTCTGTTCCCATAGTTGCTGTATTGCTGCCTCTGGTTATCATTTCTGTTTACTACTTCTTCAGGAGAGATGTCTATGACCTGCACCATGCTGTA CTAGGCCTTGCTTACTCTGTTCTAATCACTGGAGTTATAACTGATGCTATTAAAGATGCTGTTGGCCGTCCTCGTCCTGATTTCTTTTGGCGTTGTTTCC CCGATGGAAAAGGAGCATTTGATCCTGTAACAACTGAAGTTATTTGCACCGGAGTTAAGAGTGTCATCAAGGAAGGACACAAAAGTTTCCCTAGCGGACA TACCTCTTGGTCGTTTGCAGGACTTGGCTTTCTAGCATTGTATTTGTCAGGGAAAATCAGAGTATTCGACCAAAGAGGCCATGTTGCCAAGCTCTGTATT CTTTTTGCACCGCTGCTCCTTGCAGCTCTGATAGGAATATCTCGAGTTGATGACTACTGGCATCACTGGCAAGATGTATTTGCTGGTGGTCTTATAGGGC TAGTAGTTTCTTCATTTTGCTACTTGCAGTTCTTCCCTCCTCCCCACAATATTGACGGTTGGGGTCCTCACGCCTACTTCCAGATGTTAGCAGAGACGGC AAGCAGAGATCAGCCTTCCACTAATTCCAGCACTGCTCTCATCGTTCAAGGAACAGAGCTTGAGAGCGTGTACGTCGAGCCACAGCATGGCAATGGAACC CCCGGGAGGCATTAA
AA sequence Show only first row Show all	>Lus10034629 pacid=23162831 polypeptide=Lus10034629 locus=Lus10034629.g ID=Lus10034629.BGIv1.0 annot-version=v1.0 MPEIQLGTHTLKSHGVKVARTHMHDWFILLLLIVIEIVLNIIEPFHRFVGKDMLTDLSFPLKSNTVPVWSVPIVAVLLPLVIISVYYFFRRDVYDLHHAV LGLAYSVLITGVITDAIKDAVGRPRPDFFWRCFPDGKGAFDPVTTEVICTGVKSVIKEGHKSFPSGHTSWSFAGLGFLALYLSGKIRVFDQRGHVAKLCI LFAPLLLAALIGISRVDDYWHHWQDVFAGGLIGLVVSSFCYLQFFPPPHNIDGWGPHAYFQMLAETASRDQPSTNSSTALIVQGTELESVYVEPQHGNGT PGRH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15080		ATLPP2, LPP2, A...	PHOSPHATIDIC ACID PHOSPHATASE ...		Lus10034629 [exp]	0	1
AT1G54320			LEM3 (ligand-effect modulator ...		Lus10001834 [exp]	18.5	0.8101
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Lus10015297 [exp]	46.2	0.7781
AT3G01690			alpha/beta-Hydrolases superfam...		Lus10014890 [exp]	112.5	0.7663
AT1G06520		ATGPAT1, GPAT1	glycerol-3-phosphate acyltrans...		Lus10007344 [exp]	161.2	0.7582
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Lus10029373 [exp]	193.4	0.7397
AT5G08450			unknown protein		Lus10004299 [exp]	224.6	0.7327

Compare expression of checked genes

Lus10034629 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.